Gene Card
Gene overview
cDNA / CDS / Protein Sequences
459 bp · TkAUNG016780|TK1151|cDNA
ATGCATCTGAAAAAGATAAGCAGAGAGCTGAGGCAACAATTGTTCCGGAGGAGTAGACGAAGAAATGACCGCAGTAGAAGCAGAAGCCGTAGTCCTCGCCATCGTAACTATGAGGAGCGCCATGGTTCAGGGAGACGGGGGGACCATCGCCACCATGACAAAGGTAGAAGGCCTCGAAGCAGAAGTCCTGGTCGAAGGAGTGGACGAAGCAGAAGTCCTGGGGCAAGGAGAAACAGAAGTCCAGTGAGAGAAAGCAGTGT...
459 bp · TkAUNG016780|TK1151|CDS
ATGCATCTGAAAAAGATAAGCAGAGAGCTGAGGCAACAATTGTTCCGGAGGAGTAGACGAAGAAATGACCGCAGTAGAAGCAGAAGCCGTAGTCCTCGCCATCGTAACTATGAGGAGCGCCATGGTTCAGGGAGACGGGGGGACCATCGCCACCATGACAAAGGTAGAAGGCCTCGAAGCAGAAGTCCTGGTCGAAGGAGTGGACGAAGCAGAAGTCCTGGGGCAAGGAGAAACAGAAGTCCAGTGAGAGAAAGCAGTGT...
Protein
Download Protein FASTA152 aa · TkAUNG016780|TK1151|PROTEIN
MHLKKISRELRQQLFRRSRRRNDRSRSRSRSPRHRNYEERHGSGRRGDHRHHDKGRRPRSRSPGRRSGRSRSPGARRNRSPVRESSVERRAKIELWNKERETSETARDHRETSETARDHKTDNNNHDVEHNDEQSPNNNVHPSEQGNGKYDY
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkAUNG016780 |
|---|---|
| TK1151 ID | TkAUNG016780 |
| OH-1004 ID | LXL04_014894 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 54.000 |
| Protein coverage (%) | TK1151 63.816 / OH-1004 29.730Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkAUNG016780 |
|---|---|
| Location | ChrUn:4509073-4509621 (+) |
| Description | Similar to U2AF35A: Splicing factor U2af small subunit A |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0048573 photoperiodism, flowering Biological Process GO:0005634 nucleus Cellular Component GO:0005681 spliceosomal complex Cellular Component GO:0005737 cytoplasm Cellular Component GO:0016607 nuclear speck Cellular Component GO:0089701 U2AF complex Cellular Component GO:0003677 DNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0030628 pre-mRNA 3'-splice site binding Molecular Function |
| KEGG gene cross-reference | ath:AT1G27650 ath:AT5G42820 dosa:Os05g0564200 dosa:Os09g0491756 rno:361542 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.