TkAUNG012560 | RubberDandelionOmics

Gene overview

TkAUNG012560

Reference: TK1151 Chr: ChrUn Coordinates: 3139817-3140336 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

312 bp · TkAUNG012560|TK1151|cDNA

ATGCTATTTGTCCACAACTGCAGGTCCAATTGCTGGGATTCTCTTTATTTCCACACAAAAAAGTTGCATTCTGCATGTGAAAGATCCATCACACTTCACTCTTCTTCCGGTGGCCTTGTTAGGATCCCTTACAAGGCTCTCATTCCGGTGAAGAAGATAAGGGAAGCAAATAAAAGTGAGAATGTGAACAATCCATCTCAGAAGTATATAGAGATAGTAACTCAAGATAATTTTGAGTTTTGGTTCATGGGATTTGTGAG...

CDS

Download CDS FASTA

312 bp · TkAUNG012560|TK1151|CDS

ATGCTATTTGTCCACAACTGCAGGTCCAATTGCTGGGATTCTCTTTATTTCCACACAAAAAAGTTGCATTCTGCATGTGAAAGATCCATCACACTTCACTCTTCTTCCGGTGGCCTTGTTAGGATCCCTTACAAGGCTCTCATTCCGGTGAAGAAGATAAGGGAAGCAAATAAAAGTGAGAATGTGAACAATCCATCTCAGAAGTATATAGAGATAGTAACTCAAGATAATTTTGAGTTTTGGTTCATGGGATTTGTGAG...

Protein

Download Protein FASTA

103 aa · TkAUNG012560|TK1151|PROTEIN

MLFVHNCRSNCWDSLYFHTKKLHSACERSITLHSSSGGLVRIPYKALIPVKKIREANKSENVNNPSQKYIEIVTQDNFEFWFMGFVRYEKAMMNLERAISLSG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG012560`
TK1151 ID	TkAUNG012560
OH-1004 ID	LXL04_028670
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	60.500
Protein coverage (%)	TK1151 83.495 / OH-1004 31.159 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG012560

Location ChrUn:3139817-3140336 (-)

Description Similar to At5g08350: GEM-like protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g08350`	GEM-like protein 4.	No verified direct reference in this release
`At5g23370`	Putative GEM-like protein 8.	No verified direct reference in this release
`At5g23350`	GEM-like protein 6.	No verified direct reference in this release
`At5g23360`	GEM-like protein 7.	No verified direct reference in this release
`At1g28200`	GEM-like protein 1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028670 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT4G01600

ath:AT5G08350

ath:AT5G23350

ath:AT5G23360

ath:AT5G23370

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.406

Rank 1 · TkAUNG012560 · TK1151

Nucleus0.259

Rank 2 · TkAUNG012560 · TK1151

Cell membrane0.181

Rank 3 · TkAUNG012560 · TK1151

Endoplasmic reticulum0.164

Rank 4 · TkAUNG012560 · TK1151

Golgi apparatus0.136

Rank 5 · TkAUNG012560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13707RloB21-28 aa

PF02893GRAM43-97 aa

PF13707RloB53-89 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG012560	`PF13707`	RloB	21	28	0.16	12.9
TkAUNG012560	`PF02893`	GRAM	43	97	0.0014	19.2
TkAUNG012560	`PF13707`	RloB	53	89	0.16	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FTA0`	Arabidopsis thaliana	sp\|Q9FTA0\|GEML4_ARATH GEM-like protein 4	50.000%	Swiss-Prot	High
`Q9FMW4`	Arabidopsis thaliana	sp\|Q9FMW4\|GEML8_ARATH Putative GEM-like protein 8	51.100%	Swiss-Prot	High
`Q9FMW6`	Arabidopsis thaliana	sp\|Q9FMW6\|GEML6_ARATH GEM-like protein 6	52.300%	Swiss-Prot	High
`Q9FMW5`	Arabidopsis thaliana	sp\|Q9FMW5\|GEML7_ARATH GEM-like protein 7	48.800%	Swiss-Prot	Medium
`Q9SE96`	Arabidopsis thaliana	sp\|Q9SE96\|GEML1_ARATH GEM-like protein 1	34.800%	Swiss-Prot	Medium

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