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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG012310
Reference: TK1151 Chr: ChrUn Coordinates: 2987275-2989962 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2688 bp · TkAUNG012310|TK1151|cDNA

ATGCTAACGCTGAGATACGCGCGGCGACACCGTGTCCTACTTCATCGGAATTCCCTCTTCTTCTCCTCCTCCGCTACCACTCACACTTCTCCCTTCTTCCCTTCCTCTACTCCTATTCCCACTTCTGATGCTACTTCCCAATCGGAGATTCACCCTAACGACGCCGCCCACTTTTTCCGAGAATGGTTTCTCTCCCGAAAGCAGCCCCTTTTCGATCTTATCTTCGATATCCTCCGCTCCAAGGATTCCTCCTCCGTTTC...

CDS

Download CDS FASTA

2688 bp · TkAUNG012310|TK1151|CDS

ATGCTAACGCTGAGATACGCGCGGCGACACCGTGTCCTACTTCATCGGAATTCCCTCTTCTTCTCCTCCTCCGCTACCACTCACACTTCTCCCTTCTTCCCTTCCTCTACTCCTATTCCCACTTCTGATGCTACTTCCCAATCGGAGATTCACCCTAACGACGCCGCCCACTTTTTCCGAGAATGGTTTCTCTCCCGAAAGCAGCCCCTTTTCGATCTTATCTTCGATATCCTCCGCTCCAAGGATTCCTCCTCCGTTTC...

Protein

Download Protein FASTA

895 aa · TkAUNG012310|TK1151|PROTEIN

MLTLRYARRHRVLLHRNSLFFSSSATTHTSPFFPSSTPIPTSDATSQSEIHPNDAAHFFREWFLSRKQPLFDLIFDILRSKDSSSVSSALSRLNLNLNENLILDVFDYGGGDVLSCLKFFDWSGRQPGFYHTRATFHAISRILSKAKLMGILTDFLQTCGSQKYVYKANYYNVLVIGYSVAGKPELAIQLLARSRFCGLDLDGFSYHVLMNSLVEQGYFDVVDTLVKEIRCRGFQNNVTHSIMVKGFCRQNELEKAEQYL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG012310
TK1151 IDTkAUNG012310
OH-1004 IDLXL04_007504
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)42.000
Protein coverage (%)TK1151 95.307 / OH-1004 97.528
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG012310
LocationChrUn:2987275-2989962 (+)
DescriptionSimilar to At1g71210: Pentatricopeptide repeat-containing protein At1g71210, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g71210 Pentatricopeptide repeat-containing protein At1g71210, mitochondrial. No verified direct reference in this release
At3g09650 Involved in the processing of polycistronic chloroplast psbB- psbT-psbH-petB-petD transcript.
The nucleus-encoded HCF107 gene of Arabidopsis provides a link between intercistronic RNA processing and the accumulation of translation-competent psbH transcripts in chloroplasts.2001 · DOI: 10.1105/tpc.010090
HCF152, an Arabidopsis RNA binding pentatricopeptide repeat protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD RNAs.2003 · DOI: 10.1105/tpc.010397

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007504 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G71210
ath:AT3G06920
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.787
Rank 1 · TkAUNG012310 · TK1151
Plastid0.107
Rank 2 · TkAUNG012310 · TK1151
Nucleus0.066
Rank 3 · TkAUNG012310 · TK1151
Cytoplasm0.032
Rank 4 · TkAUNG012310 · TK1151
Cell membrane0.011
Rank 5 · TkAUNG012310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13934ELYS55-103 aa
PF24760TPR_IF140_C146-193 aa
PF23276TPR_24155-202 aa
PF29070MSC6_N157-191 aa
PF13812PPR_3168-194 aa
PF13041PPR_2171-214 aa
PF01535PPR171-193 aa
PF12854PPR_1171-191 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG012310PF13934ELYS551030.02415.2
TkAUNG012310PF24760TPR_IF140_C1461930.01216.7
TkAUNG012310PF23276TPR_241552027.9e-1865.4
TkAUNG012310PF29070MSC6_N1571915.2e-0936.4
TkAUNG012310PF13812PPR_31681949.2e-2277.6
TkAUNG012310PF13041PPR_21712144.7e-62206.6
TkAUNG012310PF01535PPR1711938.6e-49161.1
TkAUNG012310PF12854PPR_11711911.3e-2899.1
TkAUNG012310PF13428TPR_141781940.0009820.3
TkAUNG012310PF23276TPR_241812927.9e-1865.4
TkAUNG012310PF13041PPR_22042494.7e-62206.6
TkAUNG012310PF01535PPR2042348.6e-49161.1
TkAUNG012310PF29070MSC6_N2052285.2e-0936.4
TkAUNG012310PF23279TPR_252242810.1912.5
TkAUNG012310PF13812PPR_32252589.2e-2277.6
TkAUNG012310PF10037MRP-S272342940.002117.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GZA6Arabidopsis thalianasp|Q8GZA6|PP113_ARATH Pentatricopeptide repeat-containing protein At1g71210, mitochondrial35.600%Swiss-ProtMedium
Q9SF38Arabidopsis thalianasp|Q9SF38|PP222_ARATH Pentatricopeptide repeat-containing protein At3g09650, chloroplastic21.500%Swiss-ProtLow

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