TkAUNG005170 | RubberDandelionOmics

Gene overview

TkAUNG005170

Reference: TK1151 Chr: ChrUn Coordinates: 1533426-1536044 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1569 bp · TkAUNG005170|TK1151|cDNA

ATGTCAGAGGTATCTTCGATCATTATGGAAATTCCATTGTCCCTGCGATTAATATCTTCCCTAGAAAGGAAAGGGGCTCTTCGCTATTGGATAAAAGATGCTTCCTCTTTGCATTTATTAAGATTCTTTCTCCATGAGTGTCATAATTGGGATAGTCTTATTACTTCAAATTCAAAGAAAGGCAGTTCTTCGTTTTCAAAAAGAAATCACAGACTATTCTTCTTCCTATATACTTCTCATGTATGTGAATATGAATCTGG...

CDS

Download CDS FASTA

1569 bp · TkAUNG005170|TK1151|CDS

ATGTCAGAGGTATCTTCGATCATTATGGAAATTCCATTGTCCCTGCGATTAATATCTTCCCTAGAAAGGAAAGGGGCTCTTCGCTATTGGATAAAAGATGCTTCCTCTTTGCATTTATTAAGATTCTTTCTCCATGAGTGTCATAATTGGGATAGTCTTATTACTTCAAATTCAAAGAAAGGCAGTTCTTCGTTTTCAAAAAGAAATCACAGACTATTCTTCTTCCTATATACTTCTCATGTATGTGAATATGAATCTGG...

Protein

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522 aa · TkAUNG005170|TK1151|PROTEIN

MSEVSSIIMEIPLSLRLISSLERKGALRYWIKDASSLHLLRFFLHECHNWDSLITSNSKKGSSSFSKRNHRLFFFLYTSHVCEYESGFLFLRNQSSHLRSTSSGALIERIYFYGKIEHFAEVFARAFQANLWLFKDPFMHYVRYQGKSILASKGTFLLMNKWKYYFVNFWKSYFYLWSQPGRISINQLSNHSLDFLGYRSSVRLKPSMVRSQMLENAFIIENVIKKFETIVPIMPLIGSLAKSKFCNALGHPIERRESES...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG005170`
TK1151 ID	TkAUNG005170
OH-1004 ID	LXL04_039977
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	78.600
Protein coverage (%)	TK1151 99.808 / OH-1004 79.131 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG005170

Location ChrUn:1533426-1536044 (+)

Description Similar to matK: Maturase K

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`AtCg00020`	Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039977 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006397 mRNA processing Biological Process

GO:0008033 tRNA processing Biological Process

GO:0008380 RNA splicing Biological Process

GO:0009507 chloroplast Cellular Component

GO:0003723 RNA binding Molecular Function

KEGG gene cross-reference

han:4055638

lsv:3772834

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.325

Rank 1 · TkAUNG005170 · TK1151

Mitochondrion0.226

Rank 2 · TkAUNG005170 · TK1151

Nucleus0.173

Rank 3 · TkAUNG005170 · TK1151

Cytoplasm0.107

Rank 4 · TkAUNG005170 · TK1151

Endoplasmic reticulum0.076

Rank 5 · TkAUNG005170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01824MatK_N2-24 aa

PF01824MatK_N26-197 aa

PF01348Intron_maturas2225-253 aa

PF00124Photo_RC276-521 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG005170	`PF01824`	MatK_N	2	24	2.3e-81	274.7
TkAUNG005170	`PF01824`	MatK_N	26	197	2.3e-81	274.7
TkAUNG005170	`PF01348`	Intron_maturas2	225	253	0.2	12.3
TkAUNG005170	`PF00124`	Photo_RC	276	521	3e-82	276.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P83755`	Arabidopsis thaliana	sp\|P83755\|PSBA_ARATH Photosystem II protein D1	99.600%	Swiss-Prot	Medium

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