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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G424910
Reference: TK1151 Chr: Chr08 Coordinates: 107929068-107936923 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3052 bp · TkA08G424910|TK1151|cDNA

TCTCTCTCTCTTTCTCCATAAATGCGTTTGCATCCTCTCTATACACTGCATTAACTCCTCTCTATCTCCCCCTCCCTCTCTTCAATTCTCCTACCTGTTCCTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTATTCTTCTTAAATTCTTATCACAAGAAAAATACAGGTAGCTTCAATGGAAACCAGCCTGAAAACCATTCTTTTACTCTCCTAAAAGTGGTTTTTAGTTGACC...

CDS

Download CDS FASTA

2196 bp · TkA08G424910|TK1151|CDS

ATGTTTCAACCCAACATGTTTGAGAGTCACCACCACCATCATCTTCTTGATATGAGCCACAAGTCCCCAGAAAATCAGCTTGATATGCTTAGAGATGATGACTATGAGAGCAAATCCGGGACCGATATCATGGAAGCTCCCTCCGGAGATGATCAAGATCCCAATCAACGTCCCAACAAGAAGAAACGTTACCATCGTCACACTCAACACCAAATCCAAGAATTGGAGTCGTTTTTTAAAGAATGCCCACATCCAGATGA...

Protein

Download Protein FASTA

731 aa · TkA08G424910|TK1151|PROTEIN

MFQPNMFESHHHHHLLDMSHKSPENQLDMLRDDDYESKSGTDIMEAPSGDDQDPNQRPNKKKRYHRHTQHQIQELESFFKECPHPDDKQRKELGRRLTLEPLQVKFWFQNKRTQMKAQHERHENSSLRNENEKLRMENIRYKEALTNATCPNCGGPAAIGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPMLSYPNVSQNGPPRSLDLPIASFSPQPVMVDDMFGSSCNLVRSISGPSEADKPIIIELAVAAMEEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G424910
TK1151 IDTkA08G424910
OH-1004 IDLXL04_010080
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)90.400
Protein coverage (%)TK1151 99.316 / OH-1004 99.587
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G424910
LocationChr08:107929068-107936923 (-)
DescriptionSimilar to PDF2: Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g04890 Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'.
Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis.2003 · DOI: 10.1242/dev.00292
Mutations in epidermis-specific HD-ZIP IV genes affect floral organ identity in Arabidopsis thaliana.2013 · DOI: 10.1111/tpj.12211
Arabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-element.2014 · DOI: 10.1105/tpc.114.127647
At4g21750 Probable transcription factor involved in cell specification and pattern formation during embryogenesis.
Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein.2001 · DOI: 10.1046/j.1365-313x.2001.01047.x
Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis.2003 · DOI: 10.1242/dev.00292
Arabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-element.2014 · DOI: 10.1105/tpc.114.127647
At1g05230 Probable transcription factor (By similarity).
Mutations in epidermis-specific HD-ZIP IV genes affect floral organ identity in Arabidopsis thaliana.2013 · DOI: 10.1111/tpj.12211

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0627000 Probable transcription factor. No verified direct reference in this release
Os08g0187500 Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis.
Position dependent expression of GL2-type homeobox gene, Roc1: significance for protoderm differentiation and radial pattern formation in early rice embryogenesis.2002 · DOI: 10.1046/j.1365-313x.2002.01234.x
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010080 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0009845 seed germination Biological Process
GO:0010029 regulation of seed germination Biological Process
GO:0010090 trichome morphogenesis Biological Process
GO:0010214 seed coat development Biological Process
GO:0030154 cell differentiation Biological Process
GO:0048354 mucilage biosynthetic process involved in seed coat development Biological Process
GO:0048497 maintenance of floral organ identity Biological Process
GO:0048825 cotyledon development Biological Process
GO:0052541 plant-type cell wall cellulose metabolic process Biological Process
GO:0090627 plant epidermal cell differentiation Biological Process
GO:2000033 regulation of seed dormancy process Biological Process
KEGG gene cross-reference
ath:AT1G05230
ath:AT4G04890
ath:AT4G21750
dosa:Os04g0627000
dosa:Os08g0187500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.899
Rank 1 · TkA08G424910 · TK1151
Cytoplasm0.135
Rank 2 · TkA08G424910 · TK1151
Cell membrane0.056
Rank 3 · TkA08G424910 · TK1151
Endoplasmic reticulum0.026
Rank 4 · TkA08G424910 · TK1151
Plastid0.024
Rank 5 · TkA08G424910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16854VPS53_C45-81 aa
PF06156YabA59-81 aa
PF00046Homeodomain61-116 aa
PF30548DciA_cyano_C69-83 aa
PF05920Homeobox_KN82-113 aa
PF06156YabA114-138 aa
PF28489TUSC1117-181 aa
PF29645CHCH3_N118-134 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G424910PF16854VPS53_C45810.2512.7
TkA08G424910PF06156YabA59810.7811.1
TkA08G424910PF00046Homeodomain611161.4e-1764.0
TkA08G424910PF30548DciA_cyano_C69830.3711.1
TkA08G424910PF05920Homeobox_KN821130.001619.0
TkA08G424910PF06156YabA1141380.7811.1
TkA08G424910PF28489TUSC11171810.03114.9
TkA08G424910PF29645CHCH3_N1181340.8710.5
TkA08G424910PF21924XRCC4_CC1191420.04814.5
TkA08G424910PF07558Shugoshin_N1221398.07.1
TkA08G424910PF30548DciA_cyano_C1481630.3711.1
TkA08G424910PF06156YabA1601820.7811.1
TkA08G424910PF21924XRCC4_CC1621910.04814.5
TkA08G424910PF07558Shugoshin_N1691808.07.1
TkA08G424910PF29645CHCH3_N1701840.8710.5
TkA08G424910PF01852START2524718.1e-55186.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q93V99Arabidopsis thalianasp|Q93V99|PDF2_ARATH Homeobox-leucine zipper protein PROTODERMAL FACTOR 277.600%Swiss-ProtHigh
Q8RWU4Arabidopsis thalianasp|Q8RWU4|ATML1_ARATH Homeobox-leucine zipper protein MERISTEM L175.300%Swiss-ProtHigh
Q94C37Arabidopsis thalianasp|Q94C37|HDG2_ARATH Homeobox-leucine zipper protein HDG270.900%Swiss-ProtHigh
Q0J9X2Oryza sativa subsp. japonicasp|Q0J9X2|ROC2_ORYSJ Homeobox-leucine zipper protein ROC272.400%Swiss-ProtHigh
Q6ZAR0Oryza sativa subsp. japonicasp|Q6ZAR0|ROC1_ORYSJ Homeobox-leucine zipper protein ROC173.900%Swiss-ProtHigh

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