TkA08G410230 | RubberDandelionOmics

Gene overview

TkA08G410230

Reference: TK1151 Chr: Chr08 Coordinates: 104402384-104404333 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1437 bp · TkA08G410230|TK1151|cDNA

AAATACCCATCCCTAATTTAGGTCGGTACTCCATTGGAGCACAAAAGAGGTGGAAAGGGGGGCAATTTCTGGGGAATGGAAAAGTAACACAAGGGTTTTTCATTCGGAGGTAATCGTTTCCTTCAAACGCTCCTCCGAGATGAACTCAAACAAGACTTACCACCATAACCTCTCTTCCACGTCTATCCTACCACGCAACTCTCCGACTGGCAAATTAATGTGCGTCGTCGCTCTTCCTGCCATCAACAGCAATGATCAAA...

CDS

Download CDS FASTA

1263 bp · TkA08G410230|TK1151|CDS

TTGACCCCCTTAGGGCCTGGCCTGGAGGTGGAAAGGGGGGCAATTTCTGGGGAATGGAAAAGTAACACAAGGGTTTTTCATTCGGAGGTAATCGTTTCCTTCAAACGCTCCTCCGAGATGAACTCAAACAAGACTTACCACCATAACCTCTCTTCCACGTCTATCCTACCACGCAACTCTCCGACTGGCAAATTAATGTGCGTCGTCGCTCTTCCTGCCATCAACAGCAATGATCAAAATTCTTCTGCGTCTGCCAGAAA...

Protein

Download Protein FASTA

420 aa · TkA08G410230|TK1151|PROTEIN

LTPLGPGLEVERGAISGEWKSNTRVFHSEVIVSFKRSSEMNSNKTYHHNLSSTSILPRNSPTGKLMCVVALPAINSNDQNSSASARNSQIINGTCDVGKRKKKHSTELVQGHDENKPEIHAKQDQQLGTENKSADFGKYDQKEEKKGSDIDNNQQCGDNKKKKKKETIQIKSTKDKDHIAADNTLQHPGTPPERKERISHRVMDNPFAEFTYKHSNSHSPYFQKEGCVSCKSVKVSPYFQKKAVKENKEKKKKRSDCLTA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G410230`
TK1151 ID	TkA08G410230
OH-1004 ID	LXL04_017686
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	55.500
Protein coverage (%)	TK1151 91.190 / OH-1004 80.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G410230

Location Chr08:104402384-104404333 (+)

Description Similar to MBD4L: Methyl-CpG-binding domain protein 4-like protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g07930`	Monofunctional DNA glycosylase targeting U:G and T:G mispairs.	Molecular characterization of a putative plant homolog of MBD4 DNA glycosylase.2013 · DOI: 10.1016/j.dnarep.2013.08.002 Expression and function of AtMBD4L, the single gene encoding the nuclear DNA glycosylase MBD4L in Arabidopsis.2015 · DOI: 10.1016/j.plantsci.2015.03.011

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017686 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006281 DNA repair Biological Process

GO:0006284 base-excision repair Biological Process

GO:0006974 DNA damage response Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0007095 mitotic G2 DNA damage checkpoint signaling Biological Process

GO:0009314 response to radiation Biological Process

GO:0009408 response to heat Biological Process

GO:0032355 response to estradiol Biological Process

GO:0034605 cellular response to heat Biological Process

GO:0045008 depyrimidination Biological Process

GO:0000785 chromatin Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT3G07930

hsa:8930

mmu:17193

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.890

Rank 1 · TkA08G410230 · TK1151

Cytoplasm0.139

Rank 2 · TkA08G410230 · TK1151

Mitochondrion0.061

Rank 3 · TkA08G410230 · TK1151

Cell membrane0.023

Rank 4 · TkA08G410230 · TK1151

Endoplasmic reticulum0.010

Rank 5 · TkA08G410230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14499DUF443753-109 aa

PF00730HhH-GPD303-411 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G410230	`PF14499`	DUF4437	53	109	0.042	13.7
TkA08G410230	`PF00730`	HhH-GPD	303	411	9.4e-05	23.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0IGK1`	Arabidopsis thaliana	sp\|Q0IGK1\|MBD4L_ARATH Methyl-CpG-binding domain protein 4-like protein	59.600%	Swiss-Prot	Medium

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