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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G388400
Reference: TK1151 Chr: Chr08 Coordinates: 99068142-99073249 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1929 bp · TkA08G388400|TK1151|cDNA

ATGGTTCCTTCTTCCTATCGCGATCAGAAACGGTCCGGCACTCCTCCTTCTCCGAGTTGCAATCCGGCGACATCAGCTTCATCCTCCCGGATCGTCGTTTGCACTGAGCCCAGCATCTCTCCCTGCTCGCTGACGTATTCCCCGAGTCTCCTCTGCACCAGCCGAGATCTTTTTCCGGCGAGTTTCATTCAGCTATCTCGGGCTGGTAATTATAAACGTTATTATGATGTTGTGTTTGAATTCACTAAGCTTTGTGCTTA...

CDS

Download CDS FASTA

1929 bp · TkA08G388400|TK1151|CDS

ATGGTTCCTTCTTCCTATCGCGATCAGAAACGGTCCGGCACTCCTCCTTCTCCGAGTTGCAATCCGGCGACATCAGCTTCATCCTCCCGGATCGTCGTTTGCACTGAGCCCAGCATCTCTCCCTGCTCGCTGACGTATTCCCCGAGTCTCCTCTGCACCAGCCGAGATCTTTTTCCGGCGAGTTTCATTCAGCTATCTCGGGCTGGTAATTATAAACGTTATTATGATGTTGTGTTTGAATTCACTAAGCTTTGTGCTTA...

Protein

Download Protein FASTA

642 aa · TkA08G388400|TK1151|PROTEIN

MVPSSYRDQKRSGTPPSPSCNPATSASSSRIVVCTEPSISPCSLTYSPSLLCTSRDLFPASFIQLSRAGNYKRYYDVVFEFTKLCAYGFPNIFQTSSEDVTVYQSASQMAPPQGLNATQLAQVRELIAEEFNNAFNEVVPNVTANIIDQVRALLDERIAAGPPPGGVVPVPPVRDLMYYYEKFGKCSPPHWDGEDDPVAAKHWLSDIEGAFMTIGCPDQFRVLAAKNQLRKRGKIWLNTTTGLMGEEAVRAITWAQFVQW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G388400
TK1151 IDTkA08G388400
OH-1004 IDLXL04_016247
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)78.600
Protein coverage (%)TK1151 60.903 / OH-1004 17.373
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G388400
LocationChr08:99068142-99073249 (+)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016247 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.656
Rank 1 · TkA08G388400 · TK1151
Nucleus0.406
Rank 2 · TkA08G388400 · TK1151
Endoplasmic reticulum0.065
Rank 3 · TkA08G388400 · TK1151
Cell membrane0.064
Rank 4 · TkA08G388400 · TK1151
Mitochondrion0.059
Rank 5 · TkA08G388400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10523BEN84-154 aa
PF03732PEG10_N-capsid187-265 aa
PF19259Ty3_capsid190-372 aa
PF25316TAF2_3rd270-374 aa
PF12511DUF3716390-440 aa
PF27939DUF8363395-453 aa
PF00098zf-CCHC396-411 aa
PF14392zf-CCHC_4396-411 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G388400PF10523BEN841540.1812.7
TkA08G388400PF03732PEG10_N-capsid1872654.9e-0730.7
TkA08G388400PF19259Ty3_capsid1903722.4e-1350.7
TkA08G388400PF25316TAF2_3rd2703740.1713.0
TkA08G388400PF12511DUF37163904403.28.4
TkA08G388400PF27939DUF83633954530.002918.1
TkA08G388400PF00098zf-CCHC3964115.3e-0730.2
TkA08G388400PF14392zf-CCHC_43964110.1512.4
TkA08G388400PF13696zf-CCHC_23964110.3911.3
TkA08G388400PF00098zf-CCHC4304465.3e-0730.2
TkA08G388400PF14392zf-CCHC_44304460.1512.4
TkA08G388400PF13696zf-CCHC_24304450.3911.3
TkA08G388400PF08284RVP_24675966.6e-31107.6
TkA08G388400PF13975gag-asp_proteas4955789.8e-0523.6
TkA08G388400PF13650Asp_protease_24955570.001220.2
TkA08G388400PF30863PRO_PEG10-RTL14995961.4e-0732.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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