TkA08G374530 | RubberDandelionOmics

Gene overview

TkA08G374530

Reference: TK1151 Chr: Chr08 Coordinates: 95797393-95798417 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

387 bp · TkA08G374530|TK1151|cDNA

AGTATTGGATTGCATAATAAGCAATTGTGCTCTATAGAAACATGTTTAGATGATTTAAATGCAATTAGTATTTATGTACAGGTTCCAAGAAGAGGAGAAGATAAGAAGTGGTTACTTTTAGTCAAACTACACGAGGTGCTGTGCCCGCATTGTCATTCAGAACAGATGTGGATCTTTGATACAACAGATGGTGATTATCGTTTGTTAAAGTTCAGAAGTGGTCATAGTGCACCTCCTCTTTGTATAATGTTTTATGCTAA...

CDS

Download CDS FASTA

387 bp · TkA08G374530|TK1151|CDS

AGTATTGGATTGCATAATAAGCAATTGTGCTCTATAGAAACATGTTTAGATGATTTAAATGCAATTAGTATTTATGTACAGGTTCCAAGAAGAGGAGAAGATAAGAAGTGGTTACTTTTAGTCAAACTACACGAGGTGCTGTGCCCGCATTGTCATTCAGAACAGATGTGGATCTTTGATACAACAGATGGTGATTATCGTTTGTTAAAGTTCAGAAGTGGTCATAGTGCACCTCCTCTTTGTATAATGTTTTATGCTAA...

Protein

Download Protein FASTA

128 aa · TkA08G374530|TK1151|PROTEIN

SIGLHNKQLCSIETCLDDLNAISIYVQVPRRGEDKKWLLLVKLHEVLCPHCHSEQMWIFDTTDGDYRLLKFRSGHSAPPLCIMFYANGRHVLSAGQDRAFRLLSVIQDQQSRELSQRHITKRAKKNTN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G374530`
TK1151 ID	TkA08G374530
OH-1004 ID	LXL04_024862
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	65.600
Protein coverage (%)	TK1151 97.656 / OH-1004 54.515 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA08G374530`
Location	Chr08:95797393-95798417 (+)
Description	Similar to SPCC1672.07: U3 small nucleolar RNA-associated protein 21 homolog (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_024862` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006364 rRNA processing Biological Process GO:0030490 maturation of SSU-rRNA Biological Process GO:0042274 ribosomal small subunit biogenesis Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005730 nucleolus Cellular Component GO:0005829 cytosol Cellular Component GO:0032040 small-subunit processome Cellular Component GO:0032153 cell division site Cellular Component GO:0034388 Pwp2p-containing subcomplex of 90S preribosome Cellular Component GO:0072686 mitotic spindle Cellular Component GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference	hsa:134430 spo:2539299 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.504

Rank 1 · TkA08G374530 · TK1151

Cytoplasm0.369

Rank 2 · TkA08G374530 · TK1151

Mitochondrion0.073

Rank 3 · TkA08G374530 · TK1151

Cell membrane0.071

Rank 4 · TkA08G374530 · TK1151

Endoplasmic reticulum0.046

Rank 5 · TkA08G374530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23381Beta-prop_IFT122_1st46-116 aa

PF25175Beta-prop_WDR556-113 aa

PF00400WD4069-101 aa

PF24817WD40_WDHD1_1st72-116 aa

PF25168Beta-prop_WDR36-Utp21_2nd82-126 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G374530	`PF23381`	Beta-prop_IFT122_1st	46	116	0.0026	17.9
TkA08G374530	`PF25175`	Beta-prop_WDR5	56	113	0.021	14.8
TkA08G374530	`PF00400`	WD40	69	101	0.041	15.2
TkA08G374530	`PF24817`	WD40_WDHD1_1st	72	116	0.039	13.8
TkA08G374530	`PF25168`	Beta-prop_WDR36-Utp21_2nd	82	126	9.6e-08	32.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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