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How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G358790
Reference: TK1151 Chr: Chr08 Coordinates: 91977487-91978891 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

453 bp · TkA08G358790|TK1151|cDNA

ATGGTGGGATTTCCCTCTCTATATTTACCCATTTCTAGGCTGTGGAAATCGATCAGAAATCAGTTGAAGCTTGGGTTCGTGTTGCAGCTTGATCGAATTCTCCCATTCAGGTTTATCCTCCTGCTATCGATTCATCTTCAAGGCTATGGATTTGGTCTTTGTTGTCGATCGACGCTTCAAAGGGAATTCGGTCTTTGTTTTCGATCGACGCTTCAAAGGTTTATCCTCCAAGTGTATTTCGGTGGCAAGATGGTGCAATT...

CDS

Download CDS FASTA

453 bp · TkA08G358790|TK1151|CDS

ATGGTGGGATTTCCCTCTCTATATTTACCCATTTCTAGGCTGTGGAAATCGATCAGAAATCAGTTGAAGCTTGGGTTCGTGTTGCAGCTTGATCGAATTCTCCCATTCAGGTTTATCCTCCTGCTATCGATTCATCTTCAAGGCTATGGATTTGGTCTTTGTTGTCGATCGACGCTTCAAAGGGAATTCGGTCTTTGTTTTCGATCGACGCTTCAAAGGTTTATCCTCCAAGTGTATTTCGGTGGCAAGATGGTGCAATT...

Protein

Download Protein FASTA

150 aa · TkA08G358790|TK1151|PROTEIN

MVGFPSLYLPISRLWKSIRNQLKLGFVLQLDRILPFRFILLLSIHLQGYGFGLCCRSTLQREFGLCFRSTLQRFILQVYFGGKMVQLLQITPLYLQYEKHNYTDRKGTSFSGLELFEMVPELYRNVPCAEITEMVPVCVLKFAEMVPELY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G358790
TK1151 IDTkA08G358790
OH-1004 IDLXL04_034107
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)89.900
Protein coverage (%)TK1151 86.667 / OH-1004 23.283
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G358790
LocationChr08:91977487-91978891 (-)
DescriptionSimilar to DBP2: ATP-dependent RNA helicase DBP2 (Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_034107 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Biological Process
GO:0006364 rRNA processing Biological Process
GO:0006369 termination of RNA polymerase II transcription Biological Process
GO:0071042 nuclear polyadenylation-dependent mRNA catabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
GO:0002151 G-quadruplex RNA binding Molecular Function
GO:0003723 RNA binding Molecular Function
GO:0003724 RNA helicase activity Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
cgr:2890547
pic:PICST_82821
vpo:Kpol_165p1
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.462
Rank 1 · TkA08G358790 · TK1151
Nucleus0.336
Rank 2 · TkA08G358790 · TK1151
Mitochondrion0.157
Rank 3 · TkA08G358790 · TK1151
Endoplasmic reticulum0.119
Rank 4 · TkA08G358790 · TK1151
Cell membrane0.102
Rank 5 · TkA08G358790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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