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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G345160
Reference: TK1151 Chr: Chr08 Coordinates: 88481886-88485528 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1584 bp · TkA08G345160|TK1151|cDNA

GTAAAATGTCACAAAGTTTCGCCTCCATATTCCGTATGTGCAGGCCGAAGCACAAACAAATTGAAATCCCCAAAGAAAATTTGTTAAATTGGTCAAAACACACGCACTCTCTCTCGAATCTTCTTCGATTACTTCAAAGTAAGCAAGTACAGACAAAGCCTGGAAGTTGTAATTCAAAACAAGTTCGAAATCGAGGTTTGTTTCGCTGATTGAAGCAACTTAACCAATAAAAAGAAGTCTTTGACGCGATCTTAGAAATG...

CDS

Download CDS FASTA

1098 bp · TkA08G345160|TK1151|CDS

ATGGAGGAAGTGCAACAACAGCCGGATCAATCAATTGATGGTGAACCAGAGATTGTGACAGAAGGGTCGTCATTTGTGCATGGAGGAGCTTCTCAAGAAGATAAAGGTCCTCCCAAATTGGATACCAAAGTGGAAGTCCTTCATGAAAAGGTTTCAAAGCAAATTATTAAGGAAGGTCATGGTGACAAGCCTTCAAAATATTCCACTTGCTTTTTGCACTACAAAGCATGGACTGAAAGTACCAAACATAAGTTTGAAGA...

Protein

Download Protein FASTA

365 aa · TkA08G345160|TK1151|PROTEIN

MEEVQQQPDQSIDGEPEIVTEGSSFVHGGASQEDKGPPKLDTKVEVLHEKVSKQIIKEGHGDKPSKYSTCFLHYKAWTESTKHKFEDTWQELQLVELVLGKEKKEMSGLAIGLTSMKSGERALLHVGYELGYGEEGNFSFPNVPPKANIIYEVELVGFDETKEGKARSDMTVEERISAADRRRMDGNSLFKEEKLELAMQQYEMAIAYMGDDFMFQLFGKYQDMALAVKNPCHLNIAACLIKLKRYEEAIAQCAIVLAED...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G345160
TK1151 IDTkA08G345160
OH-1004 IDLXL04_034050
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G345160
LocationChr08:88481886-88485528 (-)
DescriptionSimilar to FKBP42: Peptidyl-prolyl cis-trans isomerase FKBP42
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g21640 PPIases accelerate the folding of proteins (By similarity).
TWISTED DWARF1, a unique plasma membrane-anchored immunophilin-like protein, interacts with Arabidopsis multidrug resistance-like transporters AtPGP1 and AtPGP19.2003 · DOI: 10.1091/mbc.e02-10-0698
The ULTRACURVATA2 gene of Arabidopsis encodes an FK506-binding protein involved in auxin and brassinosteroid signaling.2004 · DOI: 10.1104/pp.103.032524
Arabidopsis immunophilin-like TWD1 functionally interacts with vacuolar ABC transporters.2004 · DOI: 10.1091/mbc.e03-11-0831
Immunophilin-like TWISTED DWARF1 modulates auxin efflux activities of Arabidopsis P-glycoproteins.2006 · DOI: 10.1074/jbc.m604604200
The ER-localized TWD1 immunophilin is necessary for localization of multidrug resistance-like proteins required for polar auxin transport in Arabidopsis roots.2010 · DOI: 10.1105/tpc.110.078360
Arabidopsis TWISTED DWARF1 regulates stamen elongation by differential activation of ABCB1,19-mediated auxin transport.2022 · DOI: 10.1093/jxb/erac185
Loss of Multiple ABCB Auxin Transporters Recapitulates the Major twisted dwarf 1 Phenotypes in Arabidopsis thaliana .2022 · DOI: 10.3389/fpls.2022.840260

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_034050 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006457 protein folding Biological Process
GO:0006970 response to osmotic stress Biological Process
GO:0009408 response to heat Biological Process
GO:0009555 pollen development Biological Process
GO:0009611 response to wounding Biological Process
GO:0009644 response to high light intensity Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009845 seed germination Biological Process
GO:0010928 regulation of auxin mediated signaling pathway Biological Process
GO:0048229 gametophyte development Biological Process
GO:0048366 leaf development Biological Process
GO:0048439 flower morphogenesis Biological Process
KEGG gene cross-reference
ath:AT3G21640
ath:AT3G25230
ath:AT5G48570
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.598
Rank 1 · TkA08G345160 · TK1151
Nucleus0.375
Rank 2 · TkA08G345160 · TK1151
Mitochondrion0.138
Rank 3 · TkA08G345160 · TK1151
Cell membrane0.119
Rank 4 · TkA08G345160 · TK1151
Endoplasmic reticulum0.092
Rank 5 · TkA08G345160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00254FKBP_C63-156 aa
PF07719TPR_2186-209 aa
PF00515TPR_1186-207 aa
PF13414TPR_11186-208 aa
PF13432TPR_16186-208 aa
PF13428TPR_14189-207 aa
PF14559TPR_19192-209 aa
PF13174TPR_6194-206 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G345160PF00254FKBP_C631563e-1660.2
TkA08G345160PF07719TPR_21862096.1e-1039.1
TkA08G345160PF00515TPR_11862071.4e-0938.1
TkA08G345160PF13414TPR_111862082.7e-0524.5
TkA08G345160PF13432TPR_161862080.01716.3
TkA08G345160PF13428TPR_141892070.001519.7
TkA08G345160PF14559TPR_191922090.000222.4
TkA08G345160PF13174TPR_61942069.7e-0523.5
TkA08G345160PF16528Exo84_C1952930.2112.1
TkA08G345160PF13424TPR_121962080.005817.5
TkA08G345160PF12895ANAPC31972080.03915.0
TkA08G345160PF13181TPR_81982083.2e-0730.7
TkA08G345160PF12895ANAPC32312510.03915.0
TkA08G345160PF07719TPR_22322636.1e-1039.1
TkA08G345160PF00515TPR_12322621.4e-0938.1
TkA08G345160PF12968DUF38562322980.08513.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LDC0Arabidopsis thalianasp|Q9LDC0|FKB42_ARATH Peptidyl-prolyl cis-trans isomerase FKBP4270.700%Swiss-ProtHigh

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