TkA08G340570 | RubberDandelionOmics

Gene overview

TkA08G340570

Reference: TK1151 Chr: Chr08 Coordinates: 87322428-87325136 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1864 bp · TkA08G340570|TK1151|cDNA

CACATGATCAATAAATAGTGTTAAAAATAGTAAATTTGATCATACTTATCCTTCGTCAACACCAAAAAAATCGAATCTTTAAAGCATATTTATGCCTGCCGTAATTAATGATGCATAGACGAACGAATGTGAGCCGCCAGAAAAGGGAAGAAAGGTGTGAAAGCTAATTATCCGATTATATGTTGATTTTAACCCTAATTGATTAATTAAATCAAGATTAACAACAACTCTCGTTTTCCTTCGTTTGCATCGCACCTGAC...

CDS

Download CDS FASTA

1308 bp · TkA08G340570|TK1151|CDS

ATGGCTTCTATCTCCAAGCTTTCTACTCCTGTCGTCCATTTAAACTCCTCCCCTTTGCTTCCCAAAACGCCCTCCACCTCCGTCTCTCTTCGGGTTCCTTCGAAGCTTGCGCTTTCGTCCTCCAGGTTGTCCCTTCGCACCAACGCCCCTCTAGCCGCCTCTTTGCTTGTAAAATGTAGCCAAGTTGGCGGAAACGGAACCCCAGTCAAGAGAACAACTCTTCACGATCTTTACCACAAGCAAGGCCAAAGTCCATGGTA...

Protein

Download Protein FASTA

435 aa · TkA08G340570|TK1151|PROTEIN

MASISKLSTPVVHLNSSPLLPKTPSTSVSLRVPSKLALSSSRLSLRTNAPLAASLLVKCSQVGGNGTPVKRTTLHDLYHKQGQSPWYDNLCRPVTDLLPLIESGVRGVTSNPAIFQKAISTSNAYNDQFKQLVQGGKDIESAYWELVVKDIQDACRLFESIYDETDGGDGYVSVEVSPQLADDTKGTVDAAKWLHKVVDRPNVYIKIPATAACVPSIKDVIALGISVNVTLIFSLSRYEAVIDAYLDGLEASGLDDLSRV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G340570`
TK1151 ID	TkA08G340570
OH-1004 ID	LXL04_025713
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA08G340570`
Location	Chr08:87322428-87325136 (-)
Description	Similar to tal2: Transaldolase 2 (Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_025713` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0005975 carbohydrate metabolic process Biological Process GO:0006098 pentose-phosphate shunt Biological Process GO:0005737 cytoplasm Cellular Component GO:0004801 transaldolase activity Molecular Function
KEGG gene cross-reference	ace:Acel_1126 msb:LJ00_15430 msg:MSMEI_3024 msm:MSMEG_3102 rsa:RSal33209_2247 sco:SCO1936 sma:SAVERM_6314 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.980

Rank 1 · TkA08G340570 · TK1151

Cytoplasm0.045

Rank 2 · TkA08G340570 · TK1151

Mitochondrion0.038

Rank 3 · TkA08G340570 · TK1151

Peroxisome0.037

Rank 4 · TkA08G340570 · TK1151

Nucleus0.021

Rank 5 · TkA08G340570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00923TAL_FSA99-422 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G340570	`PF00923`	TAL_FSA	99	422	2.2e-74	251.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card