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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G320530
Reference: TK1151 Chr: Chr08 Coordinates: 82770827-82772617 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

549 bp · TkA08G320530|TK1151|cDNA

ATGGCTGTGAAACAAGATTGGTCTATTGAAGATTTCGAGATCGGGAAACCCCTCGGCAAGGGACTCGCCCGTGAAGTCAAGTCCTATTCAACGGGTTCTCCTATTCTTTACAAGTTCAGGATTATGACTTTTTCCACAGCTGAGAAAGAAGAATACTTTTTTGCCAATAAGATGTTTGAAACTTCATCAGCACTTGACAATCTGCATGGACAAATGAAGTCTCTGTCTGTGAAGCTGGAATCGTCAGAAGAAACTATTAG...

CDS

Download CDS FASTA

549 bp · TkA08G320530|TK1151|CDS

ATGGCTGTGAAACAAGATTGGTCTATTGAAGATTTCGAGATCGGGAAACCCCTCGGCAAGGGACTCGCCCGTGAAGTCAAGTCCTATTCAACGGGTTCTCCTATTCTTTACAAGTTCAGGATTATGACTTTTTCCACAGCTGAGAAAGAAGAATACTTTTTTGCCAATAAGATGTTTGAAACTTCATCAGCACTTGACAATCTGCATGGACAAATGAAGTCTCTGTCTGTGAAGCTGGAATCGTCAGAAGAAACTATTAG...

Protein

Download Protein FASTA

182 aa · TkA08G320530|TK1151|PROTEIN

MAVKQDWSIEDFEIGKPLGKGLAREVKSYSTGSPILYKFRIMTFSTAEKEEYFFANKMFETSSALDNLHGQMKSLSVKLESSEETIRNREKQLEELAVSKETVDKQLRDEHCKVLTSKEDNFNNMKGLYEGKEKENTDLIATNKNLSEHLDNTIQENHSLEIFVKMLTLNLADLDRQSAVKA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G320530
TK1151 IDTkA08G320530
OH-1004 IDLXL04_004578
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)73.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G320530
LocationChr08:82770827-82772617 (+)
DescriptionSimilar to ZYP1A: Synaptonemal complex protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004578 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007129 homologous chromosome pairing at meiosis Biological Process
GO:0007131 reciprocal meiotic recombination Biological Process
GO:0051301 cell division Biological Process
GO:0051878 lateral element assembly Biological Process
GO:0000795 synaptonemal complex Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0060090 molecular adaptor activity Molecular Function
KEGG gene cross-reference
ath:AT1G22260
ath:AT1G22275
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.551
Rank 1 · TkA08G320530 · TK1151
Nucleus0.364
Rank 2 · TkA08G320530 · TK1151
Mitochondrion0.064
Rank 3 · TkA08G320530 · TK1151
Cell membrane0.045
Rank 4 · TkA08G320530 · TK1151
Endoplasmic reticulum0.038
Rank 5 · TkA08G320530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27695CEP131_C45-146 aa
PF17675APG6_N46-111 aa
PF19220Rod_CreS48-178 aa
PF16526CLZ51-95 aa
PF16046FAM7655-131 aa
PF13863DUF420057-164 aa
PF16454PI3K_P85_iSH258-119 aa
PF24423OVT161-111 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G320530PF27695CEP131_C451460.004916.7
TkA08G320530PF17675APG6_N461114.08.6
TkA08G320530PF19220Rod_CreS481780.002917.5
TkA08G320530PF16526CLZ51950.02615.6
TkA08G320530PF16046FAM76551310.3211.1
TkA08G320530PF13863DUF4200571640.2812.2
TkA08G320530PF16454PI3K_P85_iSH2581190.4810.7
TkA08G320530PF24423OVT1611111.310.2
TkA08G320530PF24627PUMA_CC651060.003418.1
TkA08G320530PF24319DUF7491661020.2112.6
TkA08G320530PF26666DUF8221711600.1413.0
TkA08G320530PF14197Cep57_CLD_2791117.67.4
TkA08G320530PF06472ABC_membrane_2821670.2211.6
TkA08G320530PF24319DUF74911131590.2112.6
TkA08G320530PF24423OVT11221581.310.2
TkA08G320530PF27401YpuD_C1281640.1213.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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