TkA08G318480 | RubberDandelionOmics

Gene overview

TkA08G318480

Reference: TK1151 Chr: Chr08 Coordinates: 82334432-82339797 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

735 bp · TkA08G318480|TK1151|cDNA

ATGACTTCCTTGGTTGATCCTTCCTTGAAACTCAAAAATGGGGAGAATGGTGAAGATCTTGGAGAGCAAAATATGGTGTTCTTGGACTTGGAAGAACTAATGAAGGACGTTCAAGAGGCAAGGCGGATCAAAATGCTGCATCAACCTAGCAAGGTTATGGACATGGAACATCAGCTTCAAGCATTACGAGTTCAACTTGCTGAGAAGTCAAAGCGGTCAATTGAGCTTCAGAAAAAGGTAGTTATAATACAGTTGAATAA...

CDS

Download CDS FASTA

735 bp · TkA08G318480|TK1151|CDS

ATGACTTCCTTGGTTGATCCTTCCTTGAAACTCAAAAATGGGGAGAATGGTGAAGATCTTGGAGAGCAAAATATGGTGTTCTTGGACTTGGAAGAACTAATGAAGGACGTTCAAGAGGCAAGGCGGATCAAAATGCTGCATCAACCTAGCAAGGTTATGGACATGGAACATCAGCTTCAAGCATTACGAGTTCAACTTGCTGAGAAGTCAAAGCGGTCAATTGAGCTTCAGAAAAAGGTAGTTATAATACAGTTGAATAA...

Protein

Download Protein FASTA

244 aa · TkA08G318480|TK1151|PROTEIN

MTSLVDPSLKLKNGENGEDLGEQNMVFLDLEELMKDVQEARRIKMLHQPSKVMDMEHQLQALRVQLAEKSKRSIELQKKVVIIQLNNGVDHPSESIHVLHVGKMRMKLCKGKTNVAKEYYSPSMHLCGFPGGGNAASQALILAAKDWTVICCQFFWTDRMDAGTPIPVLIGVRPVPGRHPVYWGFYPDKDLVKAGVANQNTMLKGETEEERQDAMYKLFDVKLDLMLVIGGWNSSNTSQLQAKL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G318480`
TK1151 ID	TkA08G318480
OH-1004 ID	LXL04_033946
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	93.300
Protein coverage (%)	TK1151 30.738 / OH-1004 88.235 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G318480

Location Chr08:82334432-82339797 (+)

Description Similar to SCAB1: Stomatal closure-related actin-binding protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26770`	Plant-specific actin binding protein that bundles and stabilizes microfilaments (MFs).	The plant-specific actin binding protein SCAB1 stabilizes actin filaments and regulates stomatal movement in Arabidopsis.2011 · DOI: 10.1105/tpc.111.086546
`At4g34350`	Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).	Characterization of the Arabidopsis clb6 mutant illustrates the importance of posttranscriptional regulation of the methyl-D-erythritol 4-phosphate pathway.2005 · DOI: 10.1105/tpc.104.028860 The Arabidopsis IspH homolog is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis.2005 · DOI: 10.1104/pp.104.058735

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0731900`	Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033946 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007015 actin filament organization Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0003779 actin binding Molecular Function

KEGG gene cross-reference

ath:AT2G26770

ath:AT2G40820

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.359

Rank 1 · TkA08G318480 · TK1151

Nucleus0.263

Rank 2 · TkA08G318480 · TK1151

Mitochondrion0.210

Rank 3 · TkA08G318480 · TK1151

Cell membrane0.133

Rank 4 · TkA08G318480 · TK1151

Endoplasmic reticulum0.101

Rank 5 · TkA08G318480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16712SCAB_CC24-79 aa

PF02401LYTB42-53 aa

PF04201TPD5251-107 aa

PF06075CORD_N68-88 aa

PF17684SCAB-PH79-147 aa

PF06075CORD_N151-181 aa

PF17684SCAB-PH201-215 aa

PF02401LYTB209-241 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G318480	`PF16712`	SCAB_CC	24	79	4e-20	73.0
TkA08G318480	`PF02401`	LYTB	42	53	6.5e-07	29.7
TkA08G318480	`PF04201`	TPD52	51	107	0.024	15.6
TkA08G318480	`PF06075`	CORD_N	68	88	9.8e-06	26.2
TkA08G318480	`PF17684`	SCAB-PH	79	147	6.7e-24	84.9
TkA08G318480	`PF06075`	CORD_N	151	181	9.8e-06	26.2
TkA08G318480	`PF17684`	SCAB-PH	201	215	6.7e-24	84.9
TkA08G318480	`PF02401`	LYTB	209	241	6.5e-07	29.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O48791`	Arabidopsis thaliana	sp\|O48791\|SCAB1_ARATH Stomatal closure-related actin-binding protein 1	34.900%	Swiss-Prot	Low
`Q94B35`	Arabidopsis thaliana	sp\|Q94B35\|ISPH_ARATH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic	49.500%	Swiss-Prot	Low
`Q6AVG6`	Oryza sativa subsp. japonica	sp\|Q6AVG6\|ISPH_ORYSJ 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic	49.500%	Swiss-Prot	Low

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