TkA08G307760 | RubberDandelionOmics

Gene overview

TkA08G307760

Reference: TK1151 Chr: Chr08 Coordinates: 79623833-79626605 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1162 bp · TkA08G307760|TK1151|cDNA

AGTATTATATAAAAGAAATAGATCATTACTATGATCAGACAAAAATATGGGTCGGAATTTGAAGAATGCTCTGATTGCATTTCTAACTCCCCTTCCTTCAATACTCTTCTACACTTCCTTCCTTAACAATCACCCGCTTTTATCCCCAATTTCCTCATGGTGCTACCACCATCCACTCCTCTTAGCCAACGCCCTCTTCTTCTTCAACATCGATCTCCTTTTCTGGCTAATAAGCCTCATCCAGTCCAGCAATTGGATGA...

CDS

Download CDS FASTA

957 bp · TkA08G307760|TK1151|CDS

ATGGGTCGGAATTTGAAGAATGCTCTGATTGCATTTCTAACTCCCCTTCCTTCAATACTCTTCTACACTTCCTTCCTTAACAATCACCCGCTTTTATCCCCAATTTCCTCATGGTGCTACCACCATCCACTCCTCTTAGCCAACGCCCTCTTCTTCTTCAACATCGATCTCCTTTTCTGGCTAATAAGCCTCATCCAGTCCAGCAATTGGATGATAGATGTGTACTGGACGGTGATTCCGGTGATGCTGCTGCATTACTT...

Protein

Download Protein FASTA

318 aa · TkA08G307760|TK1151|PROTEIN

MGRNLKNALIAFLTPLPSILFYTSFLNNHPLLSPISSWCYHHPLLLANALFFFNIDLLFWLISLIQSSNWMIDVYWTVIPVMLLHYFQTHPASQFDLWRSRVVVALTWVWAVRLTHNYFRREKWQWGAREDWRFTDLARQYGKQWWWISFFAVYLIQQVFLIGVCLPLYTIHTVTKPWNMWDIVAITICISGIIIAHFADTQLYTFVTKNEKLKEEGKPMVANLDEGLWYYSRHPNYFGEQLWWWGLGIFGWNLGFTWAF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G307760`
TK1151 ID	TkA08G307760
OH-1004 ID	LXL04_033907
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA08G307760`
Location	Chr08:79623833-79626605 (+)
Description	Similar to SPCC594.04c: Uncharacterized protein C594.04c (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_033907` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0016125 sterol metabolic process Biological Process GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0016020 membrane Cellular Component GO:0016229 steroid dehydrogenase activity Molecular Function
KEGG gene cross-reference	spo:2539484 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.879

Rank 1 · TkA08G307760 · TK1151

Nucleus0.080

Rank 2 · TkA08G307760 · TK1151

Cytoplasm0.060

Rank 3 · TkA08G307760 · TK1151

Golgi apparatus0.055

Rank 4 · TkA08G307760 · TK1151

Cell membrane0.040

Rank 5 · TkA08G307760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04191PEMT56-75 aa

PF06966DUF129559-298 aa

PF04140ICMT69-87 aa

PF02544Steroid_dh75-114 aa

PF04191PEMT148-166 aa

PF04140ICMT159-180 aa

PF02544Steroid_dh181-304 aa

PF04191PEMT185-286 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G307760	`PF04191`	PEMT	56	75	0.0016	19.6
TkA08G307760	`PF06966`	DUF1295	59	298	1.2e-60	205.7
TkA08G307760	`PF04140`	ICMT	69	87	0.051	14.7
TkA08G307760	`PF02544`	Steroid_dh	75	114	0.0012	19.6
TkA08G307760	`PF04191`	PEMT	148	166	0.0016	19.6
TkA08G307760	`PF04140`	ICMT	159	180	0.051	14.7
TkA08G307760	`PF02544`	Steroid_dh	181	304	0.0012	19.6
TkA08G307760	`PF04191`	PEMT	185	286	0.0016	19.6
TkA08G307760	`PF04140`	ICMT	223	281	0.051	14.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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