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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G307530
Reference: TK1151 Chr: Chr08 Coordinates: 79576059-79579620 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2862 bp · TkA08G307530|TK1151|cDNA

ATCAAAAGTAGGTGTTGAGTTGGACTTCCTTTAAAAAAAACACTAGTTGGTGTATTCACTCTGATCGGAGATTTACTCTCAAATCAGTGATACCACCATTACCTCATAATGTTTGCTCTCTCTGGTATTGAAAAAGGATCTTCACCTTCTTCATCAATTGATGGCGATGAGTATGAATATGATGTTTTCTTAAGTTTTAGAGGTTCTGATACTCGTAATAGTTTCACTAATCACCTTTGTAGCGCCCTCAAGCGTGCAAA...

CDS

Download CDS FASTA

2253 bp · TkA08G307530|TK1151|CDS

ATGTTTGCTCTCTCTGGTATTGAAAAAGGATCTTCACCTTCTTCATCAATTGATGGCGATGAGTATGAATATGATGTTTTCTTAAGTTTTAGAGGTTCTGATACTCGTAATAGTTTCACTAATCACCTTTGTAGCGCCCTCAAGCGTGCAAACATCACAACATTCATGGATGATGACGAGATTCAGAAAGAGGGAGATCTGAAATTGGAATGGGAGAGAGTGATTAAAGCGGCTAGGGCTTCTGTTATCGTGTTGTCGCA...

Protein

Download Protein FASTA

750 aa · TkA08G307530|TK1151|PROTEIN

MFALSGIEKGSSPSSSIDGDEYEYDVFLSFRGSDTRNSFTNHLCSALKRANITTFMDDDEIQKEGDLKLEWERVIKAARASVIVLSQTYASSTWCLNELVMILKQHMASNHIVIPIYYHVDPSHVRKQIHSFGDAMAHYKHTMEVETDENKRSQRAQKIEQWSKALTKVAELVGWDVKGWRETQFIDEIVKDICRRLHISSRGPLPQLIGMDYSINLVTSWLTNASSHTTDILTILGISGIGKTSLAKYVYGLHHHEFGT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G307530
TK1151 IDTkA08G307530
OH-1004 IDLXL04_033704
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)90.000
Protein coverage (%)TK1151 94.267 / OH-1004 99.853
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G307530
LocationChr08:79576059-79579620 (+)
DescriptionSimilar to At5g39000: Putative receptor-like protein kinase At5g39000
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g28680 Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell. No verified direct reference in this release
At5g39000 Putative receptor-like protein kinase At5g39000. No verified direct reference in this release
At3g46290 Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.
Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
At3g51550 May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.
FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
At5g59700 Probable receptor-like protein kinase At5g59700. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033704 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009741 response to brassinosteroid Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0010038 response to metal ion Biological Process
GO:0010183 pollen tube guidance Biological Process
GO:0010483 pollen tube reception Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009536 plastid Cellular Component
GO:0016324 apical plasma membrane Cellular Component
GO:0043680 filiform apparatus Cellular Component
GO:0090404 pollen tube tip Cellular Component
KEGG gene cross-reference
ath:AT3G46290
ath:AT5G28680
ath:AT5G38990
ath:AT5G39000
ath:AT5G59700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.529
Rank 1 · TkA08G307530 · TK1151
Cytoplasm0.363
Rank 2 · TkA08G307530 · TK1151
Nucleus0.210
Rank 3 · TkA08G307530 · TK1151
Endoplasmic reticulum0.056
Rank 4 · TkA08G307530 · TK1151
Golgi apparatus0.038
Rank 5 · TkA08G307530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26659PH_DUOX23-53 aa
PF01582TIR24-198 aa
PF13676TIR_226-123 aa
PF13401AAA_2230-104 aa
PF13238AAA_1844-109 aa
PF00931NB-ARC51-94 aa
PF00005ABC_tran124-162 aa
PF20720nSTAND3126-161 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G307530PF26659PH_DUOX23530.04814.0
TkA08G307530PF01582TIR241989.5e-41140.3
TkA08G307530PF13676TIR_2261236.2e-1556.5
TkA08G307530PF13401AAA_22301047.9e-0523.7
TkA08G307530PF13238AAA_18441090.2812.4
TkA08G307530PF00931NB-ARC51941.5e-1041.6
TkA08G307530PF00005ABC_tran1241620.01216.9
TkA08G307530PF20720nSTAND31261610.04814.1
TkA08G307530PF13238AAA_181391710.2812.4
TkA08G307530PF25201nSTAND61551930.03314.9
TkA08G307530PF13191AAA_162083280.0004621.5
TkA08G307530PF00931NB-ARC2133571.5e-1041.6
TkA08G307530PF24883NPHP3_N2192550.03115.2
TkA08G307530PF01637ATPase_22253306.9e-0523.5
TkA08G307530PF13401AAA_222293277.9e-0523.7
TkA08G307530PF25201nSTAND62293000.03314.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q3E8W4Arabidopsis thalianasp|Q3E8W4|ANX2_ARATH Receptor-like protein kinase ANXUR244.400%Swiss-ProtLow
Q9FID8Arabidopsis thalianasp|Q9FID8|Y5900_ARATH Putative receptor-like protein kinase At5g3900044.400%Swiss-ProtLow
Q9LX66Arabidopsis thalianasp|Q9LX66|HERK_ARATH Receptor-like protein kinase HERK 144.400%Swiss-ProtLow
Q9SCZ4Arabidopsis thalianasp|Q9SCZ4|FERON_ARATH Receptor-like protein kinase FERONIA44.900%Swiss-ProtLow
Q9FN92Arabidopsis thalianasp|Q9FN92|Y5597_ARATH Probable receptor-like protein kinase At5g5970045.400%Swiss-ProtLow

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