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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G282930
Reference: TK1151 Chr: Chr08 Coordinates: 73501687-73502816 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

579 bp · TkA08G282930|TK1151|cDNA

ATGGATTCAGCTTTGCATTTCACTCGGATTGGCCTCACGGATCGCCATCTTGCCGCTTTCACTTCCAACACGCAATGCCCCATACCTTTGCAGAATGTGACTGTCCTTCGGCTGCTCCTGCCTACATCGACCGCTCCAAGCTTCCATCCACCACGACCAGACGACGATCTTCACTCTCCAGTGCACACACTACATTCCGATTTCCGAGTAGACGCAGGCCTAATCGATTTCAGGTTTCGACACAAAGACAGTGAGCATCT...

CDS

Download CDS FASTA

579 bp · TkA08G282930|TK1151|CDS

ATGGATTCAGCTTTGCATTTCACTCGGATTGGCCTCACGGATCGCCATCTTGCCGCTTTCACTTCCAACACGCAATGCCCCATACCTTTGCAGAATGTGACTGTCCTTCGGCTGCTCCTGCCTACATCGACCGCTCCAAGCTTCCATCCACCACGACCAGACGACGATCTTCACTCTCCAGTGCACACACTACATTCCGATTTCCGAGTAGACGCAGGCCTAATCGATTTCAGGTTTCGACACAAAGACAGTGAGCATCT...

Protein

Download Protein FASTA

192 aa · TkA08G282930|TK1151|PROTEIN

MDSALHFTRIGLTDRHLAAFTSNTQCPIPLQNVTVLRLLLPTSTAPSFHPPRPDDDLHSPVHTLHSDFRVDAGLIDFRFRHKDSEHLLLRFHTGYSKFKRRVSSRLPSPRLPASNPSPPADSSLPPTPLVCPSRRPPAAEKNSRWQLLLSRLSRTSPTTGFSPLDHIASLAVFRRSVLPTRQRTAVVKISRR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G282930
TK1151 IDTkA08G282930
OH-1004 IDLXL04_005259
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)91.700
Protein coverage (%)TK1151 31.250 / OH-1004 13.761
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G282930
LocationChr08:73501687-73502816 (-)
DescriptionSimilar to A1CF: APOBEC1 complementation factor
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005259 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0007283 spermatogenesis Biological Process
GO:0008380 RNA splicing Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0016556 mRNA modification Biological Process
GO:0050821 protein stabilization Biological Process
GO:0051321 meiotic cell cycle Biological Process
GO:0140374 antiviral innate immune response Biological Process
GO:0141166 chromosomal 5-methylcytosine DNA demethylation pathway Biological Process
GO:1902373 negative regulation of mRNA catabolic process Biological Process
GO:1905146 lysosomal protein catabolic process Biological Process
GO:2000623 negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Biological Process
KEGG gene cross-reference
dre:562991
hsa:29974
pon:100174508
xtr:779956
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.523
Rank 1 · TkA08G282930 · TK1151
Cytoplasm0.385
Rank 2 · TkA08G282930 · TK1151
Cell membrane0.076
Rank 3 · TkA08G282930 · TK1151
Mitochondrion0.070
Rank 4 · TkA08G282930 · TK1151
Endoplasmic reticulum0.069
Rank 5 · TkA08G282930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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