Gene Card
Gene overview
cDNA / CDS / Protein Sequences
545 bp · TkA08G273830|TK1151|cDNA
ATTAAACCGAGCCAGTATTGTCCATATTCCGTTCAAAGTATACTAGGGCTAAAGTGCTAGGGTTTCAGAGAAGCCTACCAACATATCTCTCTCTTTTCTCTCAAATTCATCAAATTCAAGACTTCGCTTTTCCGATCCAGACAAATTTCGAGGATAAACGATGCCTCCGAAATCGGCGAGGAAGTCAGTCGGGCCAGGGAGAAGAGGCGGAAGAACTAGAGGAACGCCGAAAGTGGCGGCGCAGCCTGATCCGGAGGCAG...
372 bp · TkA08G273830|TK1151|CDS
ATGCCTCCGAAATCGGCGAGGAAGTCAGTCGGGCCAGGGAGAAGAGGCGGAAGAACTAGAGGAACGCCGAAAGTGGCGGCGCAGCCTGATCCGGAGGCAGTAGCGGTACCTGAAGAATCAAAGAAGCCGGCCGAGGAGGTGCCAATTGAGGTTAAGGAAGAGGAGGAGCCAGCTGAGCTTAAAGAAGAGGTGGCGAATATTGAATCTAAAAAGGTGGAGACGTCGAAGATTGAAAAGGTTAATGAAGAAAAGCCGGAAAG...
Protein
Download Protein FASTA123 aa · TkA08G273830|TK1151|PROTEIN
MPPKSARKSVGPGRRGGRTRGTPKVAAQPDPEAVAVPEESKKPAEEVPIEVKEEEEPAELKEEVANIESKKVETSKIEKVNEEKPERLTRNQYLKMGLTLPGHMQILPSSTKEGSNGLVPKQV
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA08G273830 |
|---|---|
| TK1151 ID | TkA08G273830 |
| OH-1004 ID | LXL04_033558 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 95.200 |
| Protein coverage (%) | TK1151 68.293 / OH-1004 8.870Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA08G273830 |
|---|---|
| Location | Chr08:71290288-71291033 (-) |
| Description | Similar to LIF2: Heterogeneous nuclear ribonucleoprotein Q |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006396 RNA processing Biological Process GO:0006397 mRNA processing Biological Process GO:0007623 circadian rhythm Biological Process GO:0008380 RNA splicing Biological Process GO:0009617 response to bacterium Biological Process GO:0009909 regulation of flower development Biological Process GO:0010439 regulation of glucosinolate biosynthetic process Biological Process GO:0010468 regulation of gene expression Biological Process GO:0016556 mRNA modification Biological Process GO:0017148 negative regulation of translation Biological Process |
| KEGG gene cross-reference | ath:AT4G00830 dre:562991 hsa:10492 mmu:56403 rno:363113 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.