Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1486 bp · TkA08G268820|TK1151|cDNA
ATTTCTAATGCCTAAAGTGTTTGCTTTCCATTTTATAATCAAATAAATTAGTCCCGTTTTCTTCTGTGAATCTAATGACAGAGAGTAAAAGGAGGAGGGTTTTCAGCTGTGCTGAGGAAGATAGAATCAGTAACTTGCAAGAACACTTGTTGGACTCGATCTTGGAGCGGGTCCCGATTGAAGATGCAGCAAGGACAAGCATTCTATCAAGAAAGTGGAGGCACACATGGAGGAACATGAGGGCGCTGGTTTTTGATAAG...
954 bp · TkA08G268820|TK1151|CDS
ATGACAGAGAGTAAAAGGAGGAGGGTTTTCAGCTGTGCTGAGGAAGATAGAATCAGTAACTTGCAAGAACACTTGTTGGACTCGATCTTGGAGCGGGTCCCGATTGAAGATGCAGCAAGGACAAGCATTCTATCAAGAAAGTGGAGGCACACATGGAGGAACATGAGGGCGCTGGTTTTTGATAAGCATTTCTCCAATAAATTTGCAAAAAATGGAGCTTTTAGACGTAAGGGGTTTATAAGGATAATAAACCAAGTTTT...
Protein
Download Protein FASTA317 aa · TkA08G268820|TK1151|PROTEIN
MTESKRRRVFSCAEEDRISNLQEHLLDSILERVPIEDAARTSILSRKWRHTWRNMRALVFDKHFSNKFAKNGAFRRKGFIRIINQVLFLHKGPILTFLLHIPGNIPPDSFQEVDQWMYFLSRNGVTEIVLTNSNQLYKLPCYMFCCRELRKLKLKHCLFKPPLEFKAFLNLEDLELTNIDFGDNLCGSQISLPQLKTLSLYMCTNVCKFTIKATNLQSLVVLTGPTARSSVRILRGPYITIFGIHDFVGGERKDLSKELS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA08G268820 |
|---|---|
| TK1151 ID | TkA08G268820 |
| OH-1004 ID | LXL04_033494 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 99.600 |
| Protein coverage (%) | TK1151 87.066 / OH-1004 66.506Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA08G268820 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:70078545-70080203 (+) | |||||||||
| Description | Similar to At1g13570: F-box/FBD/LRR-repeat protein At1g13570 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0005634 nucleus Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G13570 ath:AT2G04230 ath:AT3G26920 ath:AT3G50710 ath:AT5G56420 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00646F-box18-56 aaPF23622LRR_At1g61320_AtMIF197-222 aaPF24758LRR_At5g56370113-222 aaPF12799LRR_4129-156 aaPF00646F-box142-153 aaPF12799LRR_4148-178 aaPF12799LRR_4170-208 aaPF24758LRR_At5g56370190-234 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA08G268820 | PF00646 | F-box | 18 | 56 | 7.4e-07 | 29.6 |
| TkA08G268820 | PF23622 | LRR_At1g61320_AtMIF1 | 97 | 222 | 1.8e-10 | 41.5 |
| TkA08G268820 | PF24758 | LRR_At5g56370 | 113 | 222 | 3e-08 | 34.3 |
| TkA08G268820 | PF12799 | LRR_4 | 129 | 156 | 0.17 | 12.9 |
| TkA08G268820 | PF00646 | F-box | 142 | 153 | 7.4e-07 | 29.6 |
| TkA08G268820 | PF12799 | LRR_4 | 148 | 178 | 0.17 | 12.9 |
| TkA08G268820 | PF12799 | LRR_4 | 170 | 208 | 0.17 | 12.9 |
| TkA08G268820 | PF24758 | LRR_At5g56370 | 190 | 234 | 3e-08 | 34.3 |
| TkA08G268820 | PF14290 | SDH5_plant | 250 | 280 | 0.28 | 11.8 |
| TkA08G268820 | PF12799 | LRR_4 | 255 | 271 | 0.17 | 12.9 |
| TkA08G268820 | PF24758 | LRR_At5g56370 | 292 | 303 | 3e-08 | 34.3 |
| TkA08G268820 | PF12799 | LRR_4 | 293 | 310 | 0.17 | 12.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.