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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G241010
Reference: TK1151 Chr: Chr08 Coordinates: 62860596-62862829 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2160 bp · TkA08G241010|TK1151|cDNA

CACAATCAACATCTTCTATGTTGTAGCTTTCAAAAGAGAGAGAGGGCGATTAAATGGGTTTTCTTGAGTTTTTTATTTTCGCATTAATCTCAGTTTCTTCATTTAGATGTTGCAAGAGTATTGATGATAGTAATGATGATGATGATGTTCTAGGGCTTCTAGCATTCAAAGCCGACATTATCGACTCATCATCTCATCTATCTTCATGGAATCAAGACGACAGCTCCCCATGTTCCTGGAAGTTCGTAACGTGTAATCCG...

CDS

Download CDS FASTA

1566 bp · TkA08G241010|TK1151|CDS

ATGGGTTTTCTTGAGTTTTTTATTTTCGCATTAATCTCAGTTTCTTCATTTAGATGTTGCAAGAGTATTGATGATAGTAATGATGATGATGATGTTCTAGGGCTTCTAGCATTCAAAGCCGACATTATCGACTCATCATCTCATCTATCTTCATGGAATCAAGACGACAGCTCCCCATGTTCCTGGAAGTTCGTAACGTGTAATCCGGCCACCGGAAGAGTCACCGAGGTGTCTCTCGTCGGCTTAGGTCTCTCCGGGAA...

Protein

Download Protein FASTA

521 aa · TkA08G241010|TK1151|PROTEIN

MGFLEFFIFALISVSSFRCCKSIDDSNDDDDVLGLLAFKADIIDSSSHLSSWNQDDSSPCSWKFVTCNPATGRVTEVSLVGLGLSGKIGRGLEKLQNLQVLSLARNNLTGNLNPHLNNLQALNISGNFFSGSIPPSLINSGRIKFLDLSENYLSGPIPSDTFSTCSSLRVLSLSKNDLQGPIPSSISQCTSLNHLNLSKNRFSGTPDFSTGLWLLTRIRTLDLSHNALSGRVPNGVSGLHYLKELLLQHNHFSGGLPSDM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G241010
TK1151 IDTkA08G241010
OH-1004 IDLXL04_033208
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 47.217 / OH-1004 24.649
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G241010
LocationChr08:62860596-62862829 (-)
DescriptionSimilar to At3g28040: Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g28040 Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040. No verified direct reference in this release
At5g01890 Leucine-rich repeat receptor-like protein kinase that may play a role in vascular tissues development. No verified direct reference in this release
At3g56370 Probable LRR receptor-like serine/threonine-protein kinase IRK. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0576900 Functions in the early stages of organ development by regulating cell division rate.
XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice.2012 · DOI: 10.1111/j.1365-313x.2011.04877.x
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033208 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0009755 hormone-mediated signaling pathway Biological Process
GO:0009934 regulation of meristem structural organization Biological Process
GO:0010067 procambium histogenesis Biological Process
GO:0010075 regulation of meristem growth Biological Process
GO:0010087 phloem or xylem histogenesis Biological Process
GO:0010183 pollen tube guidance Biological Process
GO:0030154 cell differentiation Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0048229 gametophyte development Biological Process
GO:0048364 root development Biological Process
GO:0048437 floral organ development Biological Process
KEGG gene cross-reference
ath:AT3G28040
ath:AT3G49670
ath:AT3G56370
ath:AT4G28650
ath:AT5G01890
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.739
Rank 1 · TkA08G241010 · TK1151
Endoplasmic reticulum0.086
Rank 2 · TkA08G241010 · TK1151
Extracellular0.086
Rank 3 · TkA08G241010 · TK1151
Cytoplasm0.073
Rank 4 · TkA08G241010 · TK1151
Nucleus0.055
Rank 5 · TkA08G241010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_229-68 aa
PF29594LRR_SKP273-105 aa
PF12799LRR_479-114 aa
PF23952LRR_EndoS91-127 aa
PF23598LRR_1492-225 aa
PF29265LRR_CARMIL92-175 aa
PF13855LRR_893-127 aa
PF24048LRR_NXF1-594-113 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G241010PF08263LRRNT_229682e-1351.1
TkA08G241010PF29594LRR_SKP2731054.4e-0626.9
TkA08G241010PF12799LRR_4791142.4e-31107.8
TkA08G241010PF23952LRR_EndoS911270.2112.5
TkA08G241010PF23598LRR_14922254.7e-2072.3
TkA08G241010PF29265LRR_CARMIL921750.439.9
TkA08G241010PF13855LRR_8931273.5e-42142.7
TkA08G241010PF24048LRR_NXF1-5941130.0005820.2
TkA08G241010PF25013LRR_Zer-1941140.008616.9
TkA08G241010PF13516LRR_6951101.8e-1247.0
TkA08G241010PF12799LRR_4961332.4e-31107.8
TkA08G241010PF00560LRR_1971199e-54168.5
TkA08G241010PF13855LRR_8971533.5e-42142.7
TkA08G241010PF24141LRR_ComC991384.3e-0524.1
TkA08G241010PF13516LRR_61151271.8e-1247.0
TkA08G241010PF23211LRR_LRWD11152213.5e-0730.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LRT1Arabidopsis thalianasp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g2804045.900%Swiss-ProtLow
Q9LZV7Arabidopsis thalianasp|Q9LZV7|PXC2_ARATH Leucine-rich repeat receptor-like protein kinase PXC242.600%Swiss-ProtLow
Q9LY03Arabidopsis thalianasp|Q9LY03|IRK_ARATH Probable LRR receptor-like serine/threonine-protein kinase IRK53.700%Swiss-ProtLow
G9LZD7Oryza sativa subsp. japonicasp|G9LZD7|XIAO_ORYSJ Probable inactive leucine-rich repeat receptor kinase XIAO43.200%Swiss-ProtLow

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