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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G240590
Reference: TK1151 Chr: Chr08 Coordinates: 62728940-62732685 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3649 bp · TkA08G240590|TK1151|cDNA

TTTTAAATGGGTTAGAAAATGGGGAAAAGTTGCCGTGTACATGACAACTTGACAAGGCATCGTATAAACCCTAAATTCGCATAGTTCAAAGTTTCAAATTTTCGGACAGAATGAGCAGAAACTGGGTAAAGATTAACCTCCATCAATCGAAGCAACGTTCTTCGTCATTCGCTCGTTTAATTTCTCTAATAGCGTACCCTACTTCATCGAAAGTTTCCCGCCAAAGTTCAGTTCATAACACCTTCAACAAATCCATCAGC...

CDS

Download CDS FASTA

3027 bp · TkA08G240590|TK1151|CDS

ATGAGCAGAAACTGGGTAAAGATTAACCTCCATCAATCGAAGCAACGTTCTTCGTCATTCGCTCGTTTAATTTCTCTAATAGCGTACCCTACTTCATCGAAAGTTTCCCGCCAAAGTTCAGTTCATAACACCTTCAACAAATCCATCAGCACTTCCTCTCCTGATCAATTAGAGGGATTGATCGATTCAAATTTTAATCCTCCAGGGATCAGTTCGGACCCTCTAAGGGATTCTGGAATCTCGGTCAATTTGGGAGAAGA...

Protein

Download Protein FASTA

1008 aa · TkA08G240590|TK1151|PROTEIN

MSRNWVKINLHQSKQRSSSFARLISLIAYPTSSKVSRQSSVHNTFNKSISTSSPDQLEGLIDSNFNPPGISSDPLRDSGISVNLGEEVAVLQRSLSVEKFESRKYSDAHIICKAITENNADFSDKTQKFLSKFRAKLSESLVVDVLKSLQNAELSVKFFIWVGRQIGYNHTLPVYETLLDIMGCNNSDRIPDHFLREIKDDDDKEVLGKLLNVLIRKYCQNGSWNSALEELARLKDFGHKPSRVTYNALIQVFLEANKLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G240590
TK1151 IDTkA08G240590
OH-1004 IDLXL04_033199
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.500
Protein coverage (%)TK1151 99.901 / OH-1004 99.114
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G240590
LocationChr08:62728940-62732685 (-)
DescriptionSimilar to At1g06710: Pentatricopeptide repeat-containing protein At1g06710, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g06710 Pentatricopeptide repeat-containing protein At1g06710, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033199 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0007005 mitochondrion organization Biological Process
GO:0044528 regulation of mitochondrial mRNA stability Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0031966 mitochondrial membrane Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G06710
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.794
Rank 1 · TkA08G240590 · TK1151
Plastid0.117
Rank 2 · TkA08G240590 · TK1151
Nucleus0.061
Rank 3 · TkA08G240590 · TK1151
Cytoplasm0.038
Rank 4 · TkA08G240590 · TK1151
Cell membrane0.013
Rank 5 · TkA08G240590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19292KPBB_C98-150 aa
PF06239ECSIT_N167-183 aa
PF10602RPN7195-235 aa
PF29070MSC6_N196-303 aa
PF12921ATP13198-229 aa
PF23300HEAT_Nup120202-240 aa
PF06239ECSIT_N203-254 aa
PF24760TPR_IF140_C207-234 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G240590PF19292KPBB_C981500.07113.0
TkA08G240590PF06239ECSIT_N1671830.07213.1
TkA08G240590PF10602RPN71952354.7e-0523.9
TkA08G240590PF29070MSC6_N1963033.7e-30106.0
TkA08G240590PF12921ATP131982290.0002121.8
TkA08G240590PF23300HEAT_Nup1202022400.001419.2
TkA08G240590PF06239ECSIT_N2032540.07213.1
TkA08G240590PF24760TPR_IF140_C2072342.1e-0938.6
TkA08G240590PF13041PPR_22122521.6e-144470.6
TkA08G240590PF12854PPR_12122291.2e-130425.6
TkA08G240590PF01535PPR2122291.7e-110354.6
TkA08G240590PF13812PPR_32122532.8e-69229.8
TkA08G240590PF23276TPR_242132991.7e-36125.8
TkA08G240590PF10037MRP-S272132739.4e-0625.5
TkA08G240590PF14559TPR_192132410.0001123.2
TkA08G240590PF13428TPR_142152344e-0730.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M9X9Arabidopsis thalianasp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial52.400%Swiss-ProtLow

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