TkA08G234990 | RubberDandelionOmics

Gene overview

TkA08G234990

Reference: TK1151 Chr: Chr08 Coordinates: 61270445-61273504 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1972 bp · TkA08G234990|TK1151|cDNA

TCCACACCAACTTCTCTGTTTTTATTACAAAATCGAAAATCCATAACAAAACCCATCAATCCAATTTCTCAGTATTTACCCACCAATTTCTCAACAAGCAGGAAAACCAATTCATTTCAAACTTGCATGGGATTATCAGTTTCGTGCCCCTTTGCTACGTGTACAGATTTGGAAACTAGCTTGACATCAATCAGCTGTTTAAATGATGACGACGGTAAAATTTTGGTCCGATCAGTCAGTTTCGAAAGTCAAGATTCTGA...

CDS

Download CDS FASTA

1740 bp · TkA08G234990|TK1151|CDS

TCCACACCAACTTCTCTGTTTTTATTACAAAATCGAAAATCCATAACAAAACCCATCAATCCAATTTCTCAGTATTTACCCACCAATTTCTCAACAAGCAGGAAAACCAATTCATTTCAAACTTGCATGGGATTATCAGTTTCGTGCCCCTTTGCTACGTGTACAGATTTGGAAACTAGCTTGACATCAATCAGCTGTTTAAATGATGACGACGGTAAAATTTTGGTCCGATCAGTCAGTTTCGAAAGTCAAGATTCTGA...

Protein

Download Protein FASTA

579 aa · TkA08G234990|TK1151|PROTEIN

STPTSLFLLQNRKSITKPINPISQYLPTNFSTSRKTNSFQTCMGLSVSCPFATCTDLETSLTSISCLNDDDGKILVRSVSFESQDSEPSITKSVSSQKMRFQESSTLKVPSPVENGLINPKQNESYIESPTMQLWSPNHEAATKLQKVYKSFRTRRKLADCAVLIEQNWWKVLDFAELKRSSISFFDLDKHETATSRWARARTRAAKVGKGLSQNSKAQKLALQHWLEAIDPRHRYGHNLHFYYLKWFQSQSKEPFFYWL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G234990`
TK1151 ID	TkA08G234990
OH-1004 ID	LXL04_004259
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	62.200
Protein coverage (%)	TK1151 88.774 / OH-1004 92.574 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G234990

Location Chr08:61270445-61273504 (+)

Description Similar to IQM2: IQ domain-containing protein IQM2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g13600`	May be involved in biotic and abiotic stress responses.	No verified direct reference in this release
`At3g58480`	May be involved in biotic and abiotic stress responses.	No verified direct reference in this release
`At2g26190`	May be involved in biotic and abiotic stress responses.	No verified direct reference in this release
`At4g33050`	Involved in the modulation of stomatal movement.	AtIQM1, a novel calmodulin-binding protein, is involved in stomatal movement in Arabidopsis.2012 · DOI: 10.1007/s11103-012-9915-0
`At5g57010`	May be involved in biotic and abiotic stress responses.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004259 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0010197 polar nucleus fusion Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005516 calmodulin binding Molecular Function

KEGG gene cross-reference

ath:AT2G26190

ath:AT3G13600

ath:AT3G58480

ath:AT4G33050

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.468

Rank 1 · TkA08G234990 · TK1151

Nucleus0.377

Rank 2 · TkA08G234990 · TK1151

Cell membrane0.261

Rank 3 · TkA08G234990 · TK1151

Plastid0.074

Rank 4 · TkA08G234990 · TK1151

Endoplasmic reticulum0.062

Rank 5 · TkA08G234990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22540RET_CRD34-71 aa

PF00612IQ139-157 aa

PF22540RET_CRD274-288 aa

PF30383IQM_M291-382 aa

PF00612IQ540-545 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G234990	`PF22540`	RET_CRD	34	71	0.29	12.1
TkA08G234990	`PF00612`	IQ	139	157	0.0072	16.7
TkA08G234990	`PF22540`	RET_CRD	274	288	0.29	12.1
TkA08G234990	`PF30383`	IQM_M	291	382	1.3e-43	147.8
TkA08G234990	`PF00612`	IQ	540	545	0.0072	16.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LHN9`	Arabidopsis thaliana	sp\|Q9LHN9\|IQM2_ARATH IQ domain-containing protein IQM2	55.800%	Swiss-Prot	High
`Q9M2G8`	Arabidopsis thaliana	sp\|Q9M2G8\|IQM6_ARATH IQ domain-containing protein IQM6	49.800%	Swiss-Prot	Medium
`O64851`	Arabidopsis thaliana	sp\|O64851\|IQM4_ARATH IQ domain-containing protein IQM4	53.700%	Swiss-Prot	High
`O82645`	Arabidopsis thaliana	sp\|O82645\|IQM1_ARATH IQ domain-containing protein IQM1	53.800%	Swiss-Prot	High
`Q058N0`	Arabidopsis thaliana	sp\|Q058N0\|IQM5_ARATH IQ domain-containing protein IQM5	50.200%	Swiss-Prot	High

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