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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G234130
Reference: TK1151 Chr: Chr08 Coordinates: 61034057-61034791 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

735 bp · TkA08G234130|TK1151|cDNA

ATGCAAGAAACCAACCCCAAACAACCAGGCTTTTTCATCACACCCTCCATCAAAGATCCAAACTACAAACTCCCAATCGACAAAAACCCTTTAGCAGAAGAATCCCAAATCCCAGATTCTCTCAAAAAAGGCTTCTTAGTTGAACACGAAGAACACCTCGAAAACCCCACCCCCAAATCTCCCGAAAAACCTGTGGTTTGTGCCAGATGTCACAGCTTGAGGAATTACGGGAAAGTAAAAGACCAAACCCTAGAAAACCT...

CDS

Download CDS FASTA

735 bp · TkA08G234130|TK1151|CDS

ATGCAAGAAACCAACCCCAAACAACCAGGCTTTTTCATCACACCCTCCATCAAAGATCCAAACTACAAACTCCCAATCGACAAAAACCCTTTAGCAGAAGAATCCCAAATCCCAGATTCTCTCAAAAAAGGCTTCTTAGTTGAACACGAAGAACACCTCGAAAACCCCACCCCCAAATCTCCCGAAAAACCTGTGGTTTGTGCCAGATGTCACAGCTTGAGGAATTACGGGAAAGTAAAAGACCAAACCCTAGAAAACCT...

Protein

Download Protein FASTA

244 aa · TkA08G234130|TK1151|PROTEIN

MQETNPKQPGFFITPSIKDPNYKLPIDKNPLAEESQIPDSLKKGFLVEHEEHLENPTPKSPEKPVVCARCHSLRNYGKVKDQTLENLLPDFDFDHTVGRRLNSVSGTRTVVIMVVDAVDFDGSFPRKAAESISKTINIHSRSWKEGKSGNLPRIILVVTKIDLLPSSISPTGFDHWVRTRSRENGANKLTKVHLVSAVKNWGLKNLADDMVTLAGPRGHIWVIGAQNAGKSTLINAMGKSVGGK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G234130
TK1151 IDTkA08G234130
OH-1004 IDLXL04_033137
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)75.800
Protein coverage (%)TK1151 100.000 / OH-1004 21.816
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G234130
LocationChr08:61034057-61034791 (+)
DescriptionSimilar to SINAT2: E3 ubiquitin-protein ligase SINAT2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g57180 Required for brassinosteroid- (BR) mediated post-transcriptional and translational regulation in the chloroplast, including accumulation of chloroplast rRNA.
The chloroplast protein BPG2 functions in brassinosteroid-mediated post-transcriptional accumulation of chloroplast rRNA.2010 · DOI: 10.1111/j.1365-313x.2009.04077.x
Arabidopsis BPG2: a phytochrome-regulated gene whose protein product binds to plastid ribosomal RNAs.2012 · DOI: 10.1007/s00425-012-1638-6
At3g47450 Exhibits cGTPase activity.
AtNOS/AtNOA1 is a functional Arabidopsis thaliana cGTPase and not a nitric-oxide synthase.2008 · DOI: 10.1074/jbc.m804838200

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0104700 Produces nitric oxide (NO) which is a messenger molecule involved in hormonal signaling and defense responses in plant. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033137 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:2000785 regulation of autophagosome assembly Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005771 multivesicular body Cellular Component
GO:0005776 autophagosome Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0012505 endomembrane system Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT2G41980
ath:AT3G58040
ath:AT3G61790
ath:AT4G27880
ath:AT5G53360
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.834
Rank 1 · TkA08G234130 · TK1151
Nucleus0.107
Rank 2 · TkA08G234130 · TK1151
Cytoplasm0.088
Rank 3 · TkA08G234130 · TK1151
Plastid0.051
Rank 4 · TkA08G234130 · TK1151
Cell membrane0.018
Rank 5 · TkA08G234130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28564GEP3_N1-80 aa
PF01926MMR_HSR197-132 aa
PF10662PduV-EutP99-136 aa
PF02421FeoB_N106-120 aa
PF00503G-alpha109-181 aa
PF19993DO-GTPase2110-186 aa
PF00009GTP_EFTU111-213 aa
PF03193RsgA_GTPase153-238 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G234130PF28564GEP3_N1802e-0526.0
TkA08G234130PF01926MMR_HSR1971320.0004421.1
TkA08G234130PF10662PduV-EutP991360.03514.6
TkA08G234130PF02421FeoB_N1061200.1212.6
TkA08G234130PF00503G-alpha1091810.0314.2
TkA08G234130PF19993DO-GTPase21101860.002518.2
TkA08G234130PF00009GTP_EFTU1112132.8e-0524.5
TkA08G234130PF03193RsgA_GTPase1532380.03314.7
TkA08G234130PF10662PduV-EutP1542080.03514.6
TkA08G234130PF13555AAA_291982370.00218.6
TkA08G234130PF01580FtsK_SpoIIIE2092370.03514.3
TkA08G234130PF00503G-alpha2192370.0314.2
TkA08G234130PF10662PduV-EutP2192370.03514.6
TkA08G234130PF00009GTP_EFTU2202392.8e-0524.5
TkA08G234130PF01926MMR_HSR12202370.0004421.1
TkA08G234130PF00350Dynamin_N2202370.00417.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8W4I6Arabidopsis thalianasp|Q8W4I6|BPG2_ARATH GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic57.500%Swiss-ProtHigh
Q66GP9Arabidopsis thalianasp|Q66GP9|NOA1_ARATH NO-associated protein 1, chloroplastic/mitochondrial27.200%Swiss-ProtLow
Q6YPG5Oryza sativa subsp. japonicasp|Q6YPG5|NOS_ORYSJ Putative nitric oxide synthase29.000%Swiss-ProtLow

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