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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G229790
Reference: TK1151 Chr: Chr08 Coordinates: 59904302-59905837 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1536 bp · TkA08G229790|TK1151|cDNA

ATGATGCGAATAAAGCCTCTGATTTCCACTCTTTCCTCGCAGCAACTCGCCCAAATCAAAGCTCATGTACTCAAATCTTCAGAACCATACGCACTGAACACTCTTCTCGATTCATTCGTAAACTCACACATCCCACAAAATACGTTTTCTCTCTACAATCAAATGCTCCAAAGCTCAAATACCCACAACCATTTTAGCTTCAATTATGCTCTCAAAGCATGTTGTTTGACAGATTCGTTCAATAAAGGGCAAGAAATCCA...

CDS

Download CDS FASTA

1536 bp · TkA08G229790|TK1151|CDS

ATGATGCGAATAAAGCCTCTGATTTCCACTCTTTCCTCGCAGCAACTCGCCCAAATCAAAGCTCATGTACTCAAATCTTCAGAACCATACGCACTGAACACTCTTCTCGATTCATTCGTAAACTCACACATCCCACAAAATACGTTTTCTCTCTACAATCAAATGCTCCAAAGCTCAAATACCCACAACCATTTTAGCTTCAATTATGCTCTCAAAGCATGTTGTTTGACAGATTCGTTCAATAAAGGGCAAGAAATCCA...

Protein

Download Protein FASTA

511 aa · TkA08G229790|TK1151|PROTEIN

MMRIKPLISTLSSQQLAQIKAHVLKSSEPYALNTLLDSFVNSHIPQNTFSLYNQMLQSSNTHNHFSFNYALKACCLTDSFNKGQEIHARVIKSGHFSHTYIQNSFIHFYVIQNDIIHAYRVFTTIDHPNVVSWTSIISGFSKCGLEKNAISMFSWMDVDPNANTLVSALSACSNIRELKLGKAIHCYGLRNSHQGNIILDNALLHFYMKVGSLENAQYLFAKMPTRDVVSWSTMVGGFVQTGLCEKAFDTFNEMVKENKV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G229790
TK1151 IDTkA08G229790
OH-1004 IDLXL04_033093
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)95.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G229790
LocationChr08:59904302-59905837 (+)
DescriptionSimilar to PCMP-H33: Pentatricopeptide repeat-containing protein At2g29760, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g38010 Pentatricopeptide repeat-containing protein At4g38010. No verified direct reference in this release
At3g05240 Putative pentatricopeptide repeat-containing protein At3g05240. No verified direct reference in this release
At2g03380 Pentatricopeptide repeat-containing protein At2g03380, mitochondrial. No verified direct reference in this release
At1g08070 Involved in multiple sites RNA editing events in chloroplasts. No verified direct reference in this release
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033093 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G08070
ath:AT2G29760
ath:AT3G05240
ath:AT4G38010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.733
Rank 1 · TkA08G229790 · TK1151
Plastid0.105
Rank 2 · TkA08G229790 · TK1151
Nucleus0.049
Rank 3 · TkA08G229790 · TK1151
Cytoplasm0.031
Rank 4 · TkA08G229790 · TK1151
Cell membrane0.005
Rank 5 · TkA08G229790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N4-80 aa
PF29144PGA45_N21-64 aa
PF23276TPR_2429-55 aa
PF13041PPR_232-75 aa
PF01535PPR32-57 aa
PF13812PPR_333-74 aa
PF24603TPR_3034-62 aa
PF17177PPR_long49-93 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G229790PF29070MSC6_N4804.2e-1143.3
TkA08G229790PF29144PGA45_N21640.1213.8
TkA08G229790PF23276TPR_2429554e-0730.7
TkA08G229790PF13041PPR_232751.2e-40138.1
TkA08G229790PF01535PPR32573.1e-34115.5
TkA08G229790PF13812PPR_333742.9e-1453.6
TkA08G229790PF24603TPR_3034628.4e-0523.7
TkA08G229790PF17177PPR_long49930.000221.5
TkA08G229790PF29978ATP18_TPR63870.003118.1
TkA08G229790PF01535PPR65943.1e-34115.5
TkA08G229790PF22330Rib_mS39_PPR761420.1112.9
TkA08G229790PF01801Cytomega_gL961500.1512.2
TkA08G229790PF13041PPR_21031221.2e-40138.1
TkA08G229790PF01535PPR1031223.1e-34115.5
TkA08G229790PF24603TPR_301041718.4e-0523.7
TkA08G229790PF12854PPR_11271566.5e-2277.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SZK1Arabidopsis thalianasp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g3801033.600%Swiss-ProtMedium
Q9MA95Arabidopsis thalianasp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g0524034.300%Swiss-ProtMedium
Q9ZQ74Arabidopsis thalianasp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380, mitochondrial32.000%Swiss-ProtMedium
Q9LN01Arabidopsis thalianasp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic29.400%Swiss-ProtLow
Q9SI53Arabidopsis thalianasp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial31.000%Swiss-ProtMedium

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