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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G229130
Reference: TK1151 Chr: Chr08 Coordinates: 59682031-59684801 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2301 bp · TkA08G229130|TK1151|cDNA

TCATGTGTGTGTTTTTTCTGTATGATATATATGGTTCAAACAAAGGCAAAAAGACGAACATCTGCCTCACAACTTGATTCAAAACTCAAGAAAAATCCATGGAGTTTCTTTCTTTTTCTGGGTTTTTTTTTTCATCTGTGAATAACACTTGATTTTAGATCCATCATCATCTTCATCTCTTCATCTGTTTTTACTGCTCAACGAAAATGACATCTGGTTATAATCCTCTTCATCTTTGAAGAAACACTCAAGTTGAAGCC...

CDS

Download CDS FASTA

999 bp · TkA08G229130|TK1151|CDS

ATGATGTCTGGTGATGGGTTCTCATCACCACCTTCTTCACTCACCTCCTTCGTCCACGACCCTATCCCAAACCCAAACCCTAACCCTAACCCTAATTCATCAGTTTCAGGTAAACGAAAGCGTAATCAGGCCGGCAATCCAGATCCAGATGCGGAGGTGATAGCTTTATCCCCGACATCTTTAATGGCTACAAACCGATTTGTATGTGAGATATGCAGTAAGGGTTTTCAAAGAGACCAGAATCTGCAGCTTCATAGAAG...

Protein

Download Protein FASTA

332 aa · TkA08G229130|TK1151|PROTEIN

MMSGDGFSSPPSSLTSFVHDPIPNPNPNPNPNSSVSGKRKRNQAGNPDPDAEVIALSPTSLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRNKNEVIKKKVYICPEKSCVHHDPSRALGDLTGVKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALMEENSRMTSLSVLPSMPHLNFRNDLMIMNGGGGGGGGGGGGAGDTQFQGVFGGGLESPLDVNGSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G229130
TK1151 IDTkA08G229130
OH-1004 IDLXL04_033080
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)97.300
Protein coverage (%)TK1151 99.096 / OH-1004 68.344
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G229130
LocationChr08:59682031-59684801 (-)
DescriptionSimilar to JKD: Zinc finger protein JACKDAW
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g03150 Transcription factor that, together with BIB, regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. No verified direct reference in this release
At3g45260 Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. No verified direct reference in this release
At3g50700 Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. No verified direct reference in this release
At3g13810 Probable transcription factor. No verified direct reference in this release
At4g02670 Probable transcription factor. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033080 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0008356 asymmetric cell division Biological Process
GO:0009740 gibberellic acid mediated signaling pathway Biological Process
GO:0009937 regulation of gibberellic acid mediated signaling pathway Biological Process
GO:0010029 regulation of seed germination Biological Process
GO:0010075 regulation of meristem growth Biological Process
GO:0010150 leaf senescence Biological Process
GO:0010336 gibberellic acid homeostasis Biological Process
GO:0010431 seed maturation Biological Process
GO:0034504 protein localization to nucleus Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
KEGG gene cross-reference
ath:AT3G45260
ath:AT3G50700
ath:AT5G03150
ath:AT5G44160
ath:AT5G66730
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.981
Rank 1 · TkA08G229130 · TK1151
Cytoplasm0.070
Rank 2 · TkA08G229130 · TK1151
Cell membrane0.021
Rank 3 · TkA08G229130 · TK1151
Endoplasmic reticulum0.012
Rank 4 · TkA08G229130 · TK1151
Plastid0.008
Rank 5 · TkA08G229130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23250zf_DPOE_263-79 aa
PF04810zf-Sec23_Sec2463-74 aa
PF02892zf-BED65-79 aa
PF23250zf_DPOE_265-79 aa
PF13465zf-H2C2_265-76 aa
PF22995C2CH-3rd_BIRD-IDD66-76 aa
PF13912zf-C2H2_666-89 aa
PF00096zf-C2H267-89 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G229130PF23250zf_DPOE_263790.08113.3
TkA08G229130PF04810zf-Sec23_Sec2463740.1313.0
TkA08G229130PF02892zf-BED65790.03514.9
TkA08G229130PF23250zf_DPOE_265790.08113.3
TkA08G229130PF13465zf-H2C2_265762.29.5
TkA08G229130PF22995C2CH-3rd_BIRD-IDD66765.3e-1658.7
TkA08G229130PF13912zf-C2H2_666890.01815.7
TkA08G229130PF00096zf-C2H267897.5e-0626.8
TkA08G229130PF12171zf-C2H2_jaz67890.0008420.2
TkA08G229130PF13894zf-C2H2_467890.003218.8
TkA08G229130PF12874zf-met67890.02815.4
TkA08G229130PF23447DUF712867761.79.3
TkA08G229130PF13465zf-H2C2_281892.29.5
TkA08G229130PF22996C2H2-2nd_BIRD-IDD1051391.5e-2176.8
TkA08G229130PF23447DUF71281131221.79.3
TkA08G229130PF23250zf_DPOE_21271550.08113.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q700D2Arabidopsis thalianasp|Q700D2|IDD10_ARATH Zinc finger protein JACKDAW83.100%Swiss-ProtMedium
Q944L3Arabidopsis thalianasp|Q944L3|IDD9_ARATH Zinc finger protein BALDIBIS78.400%Swiss-ProtMedium
Q9SCQ6Arabidopsis thalianasp|Q9SCQ6|IDD2_ARATH Zinc finger protein GAI-ASSOCIATED FACTOR 185.500%Swiss-ProtLow
Q9LRW7Arabidopsis thalianasp|Q9LRW7|IDD11_ARATH Protein indeterminate-domain 1178.000%Swiss-ProtMedium
O22759Arabidopsis thalianasp|O22759|IDD12_ARATH Protein indeterminate-domain 1276.800%Swiss-ProtMedium

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