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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G219320
Reference: TK1151 Chr: Chr08 Coordinates: 57318416-57320267 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1229 bp · TkA08G219320|TK1151|cDNA

CATATTCATCCTATCTGGCACATAAAAATGGATGAGAGAGCAGACTCGTCGGAGAACCCAATGGGACATTTCAACGGCGGCAGCTTCAACATGTTCCAAGTCGATTTTATGCAAGAAACCGGATTCGAAAATTTCATTTCTGGATTCAGAGGCGAGATGGCGGATCCCATCGGGAAATTCTGCTTAGACTACGACTGCAATCACCTTACCGACGCCTGCACGGATCTTCAGCTGCTGCCGCTGCCGTACGTTCACAATGA...

CDS

Download CDS FASTA

990 bp · TkA08G219320|TK1151|CDS

ATGGATGAGAGAGCAGACTCGTCGGAGAACCCAATGGGACATTTCAACGGCGGCAGCTTCAACATGTTCCAAGTCGATTTTATGCAAGAAACCGGATTCGAAAATTTCATTTCTGGATTCAGAGGCGAGATGGCGGATCCCATCGGGAAATTCTGCTTAGACTACGACTGCAATCACCTTACCGACGCCTGCACGGATCTTCAGCTGCTGCCGCTGCCGTACGTTCACAATGAAGCAATCGTTACTGGTGATGGTGGTGG...

Protein

Download Protein FASTA

329 aa · TkA08G219320|TK1151|PROTEIN

MDERADSSENPMGHFNGGSFNMFQVDFMQETGFENFISGFRGEMADPIGKFCLDYDCNHLTDACTDLQLLPLPYVHNEAIVTGDGGGGVDTGIGGYDAMGLHSNLIWNHESEDVVFGDDNSSETATTGNPDTPTPRSGGGGPKGDRSRTLISERKRRSGMKEKLYALRSLVPNITKMDKASIVGDAAKYIQDLQTQARNLKAEIETIEALENHKTSPQNTKKIRATNAFPIQKKISKMDVFQVEEKGYYVRLVCNKGRGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G219320
TK1151 IDTkA08G219320
OH-1004 IDLXL04_032998
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G219320
LocationChr08:57318416-57320267 (-)
DescriptionSimilar to FIT: Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g28160 Transcription factor.
The essential basic helix-loop-helix protein FIT1 is required for the iron deficiency response.2004 · DOI: 10.1105/tpc.104.024315
AtbHLH29 of Arabidopsis thaliana is a functional ortholog of tomato FER involved in controlling iron acquisition in strategy I plants.2005 · DOI: 10.1038/sj.cr.7290331
At5g57150 Transcription factor bHLH35. No verified direct reference in this release
At4g29930 Transcription factor bHLH27. No verified direct reference in this release
At2g16910 Transcription factor. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0381700 Transcription factor involved in positive regulation of genes involved in strategy II iron acquisition, including genes for mugineic acid (MA) family phytosiderophores biosynthesis, and genes involved in S-adenosylmethionine cycle and iron transport.
A transcription factor OsbHLH156 regulates Strategy II iron acquisition through localising IRO2 to the nucleus in rice.2020 · DOI: 10.1111/nph.16232
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032998 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009555 pollen development Biological Process
GO:0010039 response to iron ion Biological Process
GO:0034756 regulation of iron ion transport Biological Process
GO:0048658 anther wall tapetum development Biological Process
GO:0005634 nucleus Cellular Component
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function
GO:0003682 chromatin binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
GO:0043565 sequence-specific DNA binding Molecular Function
GO:0046983 protein dimerization activity Molecular Function
KEGG gene cross-reference
ath:AT2G16910
ath:AT2G28160
ath:AT4G29930
ath:AT5G57150
osa:107276663
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.963
Rank 1 · TkA08G219320 · TK1151
Cytoplasm0.105
Rank 2 · TkA08G219320 · TK1151
Cell membrane0.030
Rank 3 · TkA08G219320 · TK1151
Endoplasmic reticulum0.021
Rank 4 · TkA08G219320 · TK1151
Plastid0.011
Rank 5 · TkA08G219320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02388FemAB26-53 aa
PF26255Viral_env_HRPV118-123 aa
PF00010HLH149-194 aa
PF23177bHLH_IRO3152-211 aa
PF23173bHLH_SAC51152-197 aa
PF28743IPGAL2_N156-171 aa
PF26255Viral_env_HRPV180-216 aa
PF07851TMEM120A-B185-254 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G219320PF02388FemAB26531.88.0
TkA08G219320PF26255Viral_env_HRPV1181233.48.2
TkA08G219320PF00010HLH1491941.3e-1041.7
TkA08G219320PF23177bHLH_IRO31522112.5e-0628.5
TkA08G219320PF23173bHLH_SAC511521970.01316.1
TkA08G219320PF28743IPGAL2_N1561710.1912.2
TkA08G219320PF26255Viral_env_HRPV1802163.48.2
TkA08G219320PF07851TMEM120A-B1852540.112.5
TkA08G219320PF02388FemAB1852281.88.0
TkA08G219320PF24918NET2A_C1872380.113.2
TkA08G219320PF28743IPGAL2_N1892100.1912.2
TkA08G219320PF28532DUF84282092610.05814.0
TkA08G219320PF00010HLH2302401.3e-1041.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0V7X4Arabidopsis thalianasp|Q0V7X4|FIT_ARATH Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR61.600%Swiss-ProtMedium
Q2HIV9Arabidopsis thalianasp|Q2HIV9|BH035_ARATH Transcription factor bHLH3531.900%Swiss-ProtMedium
Q700E3Arabidopsis thalianasp|Q700E3|BH027_ARATH Transcription factor bHLH2730.600%Swiss-ProtLow
Q9ZVX2Arabidopsis thalianasp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES29.000%Swiss-ProtLow
A0A0N7KIY3Oryza sativa subsp. japonicasp|A0A0N7KIY3|BH156_ORYSJ Transcription factor BHLH15632.500%Swiss-ProtMedium

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