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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G213820
Reference: TK1151 Chr: Chr08 Coordinates: 55946867-55951404 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3798 bp · TkA08G213820|TK1151|cDNA

ATGGAAGCGACGAGCAGGAGCGACGATGTCCTCGGGAGAAAAAAAAAGTCACGTCCGGTTGCCGGAGGAGAAAGATGCTGGGTCGAAGATGCTGTCGTCGGTAGCAGAAGCAGGTTCGAAGATGCTGTCGTCGGTAGCAAAAGCAGCGCCTGGATGTGCAGTGACCAAGAAGCAGCGCTGGCGACCGGAGGAAGAAGAAAGAAGAAGGCCGGCGAGGCAAGTGAAATGGCCCGTACTAGAAGTGGGCAAGGAGGTGGACA...

CDS

Download CDS FASTA

3798 bp · TkA08G213820|TK1151|CDS

ATGGAAGCGACGAGCAGGAGCGACGATGTCCTCGGGAGAAAAAAAAAGTCACGTCCGGTTGCCGGAGGAGAAAGATGCTGGGTCGAAGATGCTGTCGTCGGTAGCAGAAGCAGGTTCGAAGATGCTGTCGTCGGTAGCAAAAGCAGCGCCTGGATGTGCAGTGACCAAGAAGCAGCGCTGGCGACCGGAGGAAGAAGAAAGAAGAAGGCCGGCGAGGCAAGTGAAATGGCCCGTACTAGAAGTGGGCAAGGAGGTGGACA...

Protein

Download Protein FASTA

1265 aa · TkA08G213820|TK1151|PROTEIN

MEATSRSDDVLGRKKKSRPVAGGERCWVEDAVVGSRSRFEDAVVGSKSSAWMCSDQEAALATGGRRKKKAGEASEMARTRSGQGGGQSGSQNSRGRPRSVNRPPPILEDGNSNPAPVTLEAIQKLLHDQQVQNRAEMNNLINERLQEFSKALTHDAASGSVHPSNSPIHEIQHNSRNSPSPSPQNPPRHRCTFKDFMVCRPKEFQGDKDPNVTMRWLAEIEQVLRVCRCEEDMKVTFASQMLKGDALTWWNTLTTSMGGD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G213820
TK1151 IDTkA08G213820
OH-1004 IDLXL04_014154
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)87.000
Protein coverage (%)TK1151 93.992 / OH-1004 31.376
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G213820
LocationChr08:55946867-55951404 (+)
DescriptionSimilar to DPEP: 4-alpha-glucanotransferase, chloroplastic/amyloplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014154 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000025 maltose catabolic process Biological Process
GO:0000272 polysaccharide catabolic process Biological Process
GO:0005983 starch catabolic process Biological Process
GO:0006006 glucose metabolic process Biological Process
GO:0006310 DNA recombination Biological Process
GO:0006508 proteolysis Biological Process
GO:0015074 DNA integration Biological Process
GO:0075523 viral translational frameshifting Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009501 amyloplast Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT5G64860
dosa:Os07g0627000
sce:YIL082W-A
sot:102595076
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.632
Rank 1 · TkA08G213820 · TK1151
Nucleus0.374
Rank 2 · TkA08G213820 · TK1151
Mitochondrion0.076
Rank 3 · TkA08G213820 · TK1151
Cell membrane0.057
Rank 4 · TkA08G213820 · TK1151
Endoplasmic reticulum0.049
Rank 5 · TkA08G213820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19259Ty3_capsid189-365 aa
PF03732PEG10_N-capsid201-278 aa
PF19148DUF5830355-408 aa
PF30379SLU7_N399-409 aa
PF00098zf-CCHC401-407 aa
PF30379SLU7_N415-433 aa
PF00098zf-CCHC421-433 aa
PF14392zf-CCHC_4421-433 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G213820PF19259Ty3_capsid1893656.9e-1349.2
TkA08G213820PF03732PEG10_N-capsid2012785.2e-1349.9
TkA08G213820PF19148DUF58303554080.1412.8
TkA08G213820PF30379SLU7_N3994092.08.7
TkA08G213820PF00098zf-CCHC4014070.0001422.5
TkA08G213820PF30379SLU7_N4154332.08.7
TkA08G213820PF00098zf-CCHC4214330.0001422.5
TkA08G213820PF14392zf-CCHC_44214334.57.7
TkA08G213820PF00098zf-CCHC4404550.0001422.5
TkA08G213820PF14392zf-CCHC_44414564.57.7
TkA08G213820PF08284RVP_24765759e-2278.1
TkA08G213820PF13975gag-asp_proteas5055470.03415.4
TkA08G213820PF13650Asp_protease_25065480.01916.4
TkA08G213820PF30863PRO_PEG10-RTL15075490.0006820.8
TkA08G213820PF00078RVT_17198793.8e-41141.9
TkA08G213820PF17919RT_RNaseH_294210354.4e-30104.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

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