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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G206780
Reference: TK1151 Chr: Chr08 Coordinates: 54009467-54014309 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3396 bp · TkA08G206780|TK1151|cDNA

AAACAGCCTCCACGAGCACACGGGCGGTGTGCACGCCCGTGGCTCGTGGCCACGTCCTCACCACGAAATCAAGCTCCCGTCCCATGTACTCCGATCGGTCTTATTTTCAACAACCAACCAAACAAAATCAATTGGTCATGTGATCTCACACTCCACTCACCCAACCTAATGGCCATCATCATCAATTCATCGCTATAAAAAACAGAGCCTAGTGCGATGCGAGTGCATTTGCGCTCGTTTTCTCCGCGTTTGATCACTAA...

CDS

Download CDS FASTA

2139 bp · TkA08G206780|TK1151|CDS

ATGCGAGTGCATTTGCGCTCGTTTTCTCCGCGTTTGATCACTAATTGCGGCTGCTTCTCTACTACTTTTCATTTCACTACAACATCCATGTCTTACCGCCCTAATGCTCAAGGCGGCCGTCGCGGTGGCGGTCGTGGAGGAGGTCGAGGAGGTGGTCGCCGTGGCGGCGGAGGTGGAGGTGGAGGTGGAGGTGGAGGCGGAAGAGGTGAACAAAGATGGTGGGACCCCGTTTGGCGTGCTGAGAGGCTTAGACAGATGCA...

Protein

Download Protein FASTA

712 aa · TkA08G206780|TK1151|PROTEIN

MRVHLRSFSPRLITNCGCFSTTFHFTTTSMSYRPNAQGGRRGGGRGGGRGGGRRGGGGGGGGGGGGGRGEQRWWDPVWRAERLRQMQGEVEVFDKNHWWGKLEEMKKGGDAELIIKHYFSRGDQQTLSDMAYQLELYFHAYNKGKALVVSKVPLPNYRADLDEHHGSSQKEIHMSTETERRVENLLDSSTATEKVNNISGTSIQTTKQSPHESDKTTSISDTAKKALNLDLKERQEKQNQSDRVKAMSLFREKLPAHKMK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G206780
TK1151 IDTkA08G206780
OH-1004 IDLXL04_032818
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.900
Protein coverage (%)TK1151 99.860 / OH-1004 69.434
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G206780
LocationChr08:54009467-54014309 (+)
DescriptionSimilar to At2g35920: DExH-box ATP-dependent RNA helicase DExH1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g35920 DExH-box ATP-dependent RNA helicase DExH1. No verified direct reference in this release
At1g48650 DExH-box ATP-dependent RNA helicase DExH3. No verified direct reference in this release
At2g01130 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032818 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001503 ossification Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006359 regulation of transcription by RNA polymerase III Biological Process
GO:0007283 spermatogenesis Biological Process
GO:0010628 positive regulation of gene expression Biological Process
GO:0017148 negative regulation of translation Biological Process
GO:0030154 cell differentiation Biological Process
GO:0031442 positive regulation of mRNA 3'-end processing Biological Process
GO:0032206 positive regulation of telomere maintenance Biological Process
GO:0034605 cellular response to heat Biological Process
GO:0034644 cellular response to UV Biological Process
GO:0043488 regulation of mRNA stability Biological Process
KEGG gene cross-reference
ath:AT1G48650
ath:AT2G01130
ath:AT2G35920
bta:509583
hsa:170506
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.795
Rank 1 · TkA08G206780 · TK1151
Cytoplasm0.139
Rank 2 · TkA08G206780 · TK1151
Nucleus0.109
Rank 3 · TkA08G206780 · TK1151
Plastid0.052
Rank 4 · TkA08G206780 · TK1151
Peroxisome0.030
Rank 5 · TkA08G206780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27261DEXH1_3_5_N96-169 aa
PF20720nSTAND3165-238 aa
PF00271Helicase_C166-187 aa
PF13173AAA_14171-189 aa
PF13245AAA_19172-209 aa
PF13173AAA_14215-252 aa
PF00271Helicase_C228-252 aa
PF03215Rad17257-288 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G206780PF27261DEXH1_3_5_N961691.1e-2693.6
TkA08G206780PF20720nSTAND31652380.09813.1
TkA08G206780PF00271Helicase_C1661877.7e-1555.8
TkA08G206780PF13173AAA_141711890.2811.9
TkA08G206780PF13245AAA_191722090.01716.0
TkA08G206780PF13173AAA_142152520.2811.9
TkA08G206780PF00271Helicase_C2282527.7e-1555.8
TkA08G206780PF03215Rad172572880.08513.5
TkA08G206780PF00270DEAD2614151.1e-0938.9
TkA08G206780PF20720nSTAND32622910.09813.1
TkA08G206780PF13245AAA_192653830.01716.0
TkA08G206780PF13401AAA_222704097.9e-0523.7
TkA08G206780PF13173AAA_142702950.2811.9
TkA08G206780PF05729NACHT2724100.2212.0
TkA08G206780PF13173AAA_143703930.2811.9
TkA08G206780PF20720nSTAND34414630.09813.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4ILR7Arabidopsis thalianasp|F4ILR7|DEXH1_ARATH DExH-box ATP-dependent RNA helicase DExH173.500%Swiss-ProtHigh
F4HYJ7Arabidopsis thalianasp|F4HYJ7|DEXH3_ARATH DExH-box ATP-dependent RNA helicase DExH351.500%Swiss-ProtHigh
F4IM84Arabidopsis thalianasp|F4IM84|DEXH5_ARATH DExH-box ATP-dependent RNA helicase DExH5, mitochondrial48.300%Swiss-ProtMedium

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