TkA08G204810 | RubberDandelionOmics

Gene overview

TkA08G204810

Reference: TK1151 Chr: Chr08 Coordinates: 53528694-53530267 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1065 bp · TkA08G204810|TK1151|cDNA

CAAAGGTAAAGCCTATTTTTGCGAAATGTATAAACCGCCATCTGGTAGTAGTGTGTTTAAACGGTGAACTACCTGAAATCATAAACCCTAAAAATGGATGATGTGAGAGACGTAAACACCGGCGCCGACGCCGGCGACGATGACACTCCAATGCTGAGTTCTCATACTCTAGCAGCTCTCAAAGAGTTTCTCTCTGAACAGAACGGCTTACTTGACGCAAACAAAGATGGAGCGACGGACGTGACTGAGGACAAAAAAGA...

CDS

Download CDS FASTA

720 bp · TkA08G204810|TK1151|CDS

ATGGATGATGTGAGAGACGTAAACACCGGCGCCGACGCCGGCGACGATGACACTCCAATGCTGAGTTCTCATACTCTAGCAGCTCTCAAAGAGTTTCTCTCTGAACAGAACGGCTTACTTGACGCAAACAAAGATGGAGCGACGGACGTGACTGAGGACAAAAAAGAGGTGGCGTTAGTCACAGAGGACTGGAGATTAAGCCAGTTTTGGTACGATCGTGAAACTGCTGAGACGGTTGCGAGAGAAGTTAACGCCCTGTA...

Protein

Download Protein FASTA

239 aa · TkA08G204810|TK1151|PROTEIN

MDDVRDVNTGADAGDDDTPMLSSHTLAALKEFLSEQNGLLDANKDGATDVTEDKKEVALVTEDWRLSQFWYDRETAETVAREVNALYTSMDSPPSVACIACPTLYVYLKKLHPDLRVQLLEYDNRFKQYGSEFTFYDYNQPLELPSSMKHSFRIIIADPPYLSKECLEKVSETIGFLKQPGESYLLLLTGAVQHERANELLGLRPCEFRPQHSSKLGNEFRLFTNYDPGLRLGGWEQEQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G204810`
TK1151 ID	TkA08G204810
OH-1004 ID	LXL04_032787
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA08G204810`
Location	Chr08:53528694-53530267 (-)
Description	Similar to Eef1akmt1: EEF1A lysine methyltransferase 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_032787` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006479 protein methylation Biological Process GO:0018022 peptidyl-lysine methylation Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0003676 nucleic acid binding Molecular Function GO:0008168 methyltransferase activity Molecular Function GO:0016279 protein-lysine N-methyltransferase activity Molecular Function
KEGG gene cross-reference	bta:783374 gga:418951 hsa:221143 mmu:68043 xla:444395 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.695

Rank 1 · TkA08G204810 · TK1151

Cytoplasm0.661

Rank 2 · TkA08G204810 · TK1151

Mitochondrion0.053

Rank 3 · TkA08G204810 · TK1151

Endoplasmic reticulum0.022

Rank 4 · TkA08G204810 · TK1151

Cell membrane0.020

Rank 5 · TkA08G204810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01861BpsA_C48-80 aa

PF10237N6-adenineMlase62-227 aa

PF01861BpsA_C119-185 aa

PF07669Eco57I121-169 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G204810	`PF01861`	BpsA_C	48	80	0.033	14.2
TkA08G204810	`PF10237`	N6-adenineMlase	62	227	1.4e-55	188.3
TkA08G204810	`PF01861`	BpsA_C	119	185	0.033	14.2
TkA08G204810	`PF07669`	Eco57I	121	169	0.2	12.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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