TkA08G203940 | RubberDandelionOmics

Gene overview

TkA08G203940

Reference: TK1151 Chr: Chr08 Coordinates: 53331191-53331968 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

716 bp · TkA08G203940|TK1151|cDNA

AAAAAACAGCATTTTGGCAAACGGGTGACCATCCCAATGCACGGATTACCACTAATTCAAACCGTTTCAAAATATAGTCAAGCAATTTCTCAACTTTCAACCTATAAATACTCCCATCATCATTAAATCTCCATACTCACAACACTCTCAAAATCAGCAATTAATCATCTTTTAGGGCTTTCAAAAGTCAAAACCATGGGTGTCTTGACATATACCGATGAACACACTTCCGCAATTCTTCCATCAAGAATTTTCAAAGC...

CDS

Download CDS FASTA

471 bp · TkA08G203940|TK1151|CDS

ATGGGTGTCTTGACATATACCGATGAACACACTTCCGCAATTCTTCCATCAAGAATTTTCAAAGCCTCAATTATTGACTCCCACAACTTGATGCCAAAACTCTTGCCAGATGCTATTAAAAGCGTCGAATTTCTCAAAGGTGATGGTGGGGCCGGAAGCATTAAGCAGATTAACTTTGCGGGAGGTTATGTGAAGCACGAAATAGAGGAAGTGAATGAGAAGACGTTCACATACAAGTACAGTTTAATTGAAGGAATGGG...

Protein

Download Protein FASTA

156 aa · TkA08G203940|TK1151|PROTEIN

MGVLTYTDEHTSAILPSRIFKASIIDSHNLMPKLLPDAIKSVEFLKGDGGAGSIKQINFAGGYVKHEIEEVNEKTFTYKYSLIEGMGISDKIQKVSYDIKFEGSPDNGTIAKMTTTIYTHGDFELKEEELNAGKEKVLGLYKVVEAYLLKNPDAYV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G203940`
TK1151 ID	TkA08G203940
OH-1004 ID	LXL04_032775
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA08G203940`
Location	Chr08:53331191-53331968 (+)
Description	Similar to Major allergen Pru ar 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_032775` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006952 defense response Biological Process GO:0009738 abscisic acid-activated signaling pathway Biological Process GO:0009813 flavonoid biosynthetic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0004518 nuclease activity Molecular Function GO:0004864 protein phosphatase inhibitor activity Molecular Function GO:0010427 abscisic acid binding Molecular Function GO:0016787 hydrolase activity Molecular Function GO:0038023 signaling receptor activity Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.846

Rank 1 · TkA08G203940 · TK1151

Nucleus0.236

Rank 2 · TkA08G203940 · TK1151

Endoplasmic reticulum0.069

Rank 3 · TkA08G203940 · TK1151

Cell membrane0.051

Rank 4 · TkA08G203940 · TK1151

Mitochondrion0.046

Rank 5 · TkA08G203940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00407Bet_v_11-151 aa

PF27084Phage_YorO5-40 aa

PF27084Phage_YorO74-84 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G203940	`PF00407`	Bet_v_1	1	151	1.4e-13	51.7
TkA08G203940	`PF27084`	Phage_YorO	5	40	0.17	12.9
TkA08G203940	`PF27084`	Phage_YorO	74	84	0.17	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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