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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G203200
Reference: TK1151 Chr: Chr08 Coordinates: 53108744-53122064 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6379 bp · TkA08G203200|TK1151|cDNA

CGCGAATGAAAGAGCGAACAGGAAACAAAAAAGAAAGAAAAATAGAAGCTTGAATGGATGTCTTATATCTCTTGTCAGCCAAGAGCGATTTTTTTTTGAAGATTTTTTGAAGTAATGCCCTGAATTTTGAGGAAGTAATGGCCTCTAAAGGTCCAAGGTCTAGACTTGATCATGAGACAAGAGCCAAACGGCAAAAGGCTCTTGAACCACCCAAGGAACCCCAGCGGCCCAGAACTCATTGGGACCATCTTTTGGAAGAG...

CDS

Download CDS FASTA

5502 bp · TkA08G203200|TK1151|CDS

ATGGCCTCTAAAGGTCCAAGGTCTAGACTTGATCATGAGACAAGAGCCAAACGGCAAAAGGCTCTTGAACCACCCAAGGAACCCCAGCGGCCCAGAACTCATTGGGACCATCTTTTGGAAGAGATGGTATGGTTATCAAAGGATTTCGAGTCTGAGAGAAAATTCAAATTAGGCCTGGCAAAAAGGATTGCCATAAGGGCCAGCAAAGGTATGGTAGATCAAGCCACAAAAGGTGAAAGAAGAGTGAAGGAGGAAGAGCT...

Protein

Download Protein FASTA

1833 aa · TkA08G203200|TK1151|PROTEIN

MASKGPRSRLDHETRAKRQKALEPPKEPQRPRTHWDHLLEEMVWLSKDFESERKFKLGLAKRIAIRASKGMVDQATKGERRVKEEELRMKKVALNISKDVKKFWTKIEKLVLYKHRLELDQKKKKALDKQLEFLLGQTERYSTMLAENLVDSSSRQHVNLPPVPAIEYKDQSDVNGSAEPNVESQSNILETDEDYKSEIEPEDDEHTLEEDEALITEDERREEIAALQNEMDLPLEELLSRYTAKDEETTPGKTEGVAEV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G203200
TK1151 IDTkA08G203200
OH-1004 IDLXL04_032750
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.600
Protein coverage (%)TK1151 99.454 / OH-1004 93.824
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G203200
LocationChr08:53108744-53122064 (-)
DescriptionSimilar to PIE1: Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g12810 Component of the SWR1 complex which mediates the ATP- dependent exchange of histone H2A for the H2A variant H2A.F/Z leading to transcriptional regulation of selected genes (e.g. FLC) by chromatin remodeling.
PIE1, an ISWI family gene, is required for FLC activation and floral repression in Arabidopsis.2003 · DOI: 10.1105/tpc.012161
Repression of flowering in Arabidopsis requires activation of FLOWERING LOCUS C expression by the histone variant H2A.Z.2007 · DOI: 10.1105/tpc.106.048447
Histone H2A.Z and homologues of components of the SWR1 complex are required to control immunity in Arabidopsis.2008 · DOI: 10.1111/j.1365-313x.2007.03361.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032750 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000725 recombinational repair Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009908 flower development Biological Process
GO:0030154 cell differentiation Biological Process
GO:0045815 transcription initiation-coupled chromatin remodeling Biological Process
GO:0046686 response to cadmium ion Biological Process
GO:1900239 regulation of phenotypic switching Biological Process
GO:0000785 chromatin Cellular Component
GO:0000812 Swr1 complex Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT3G12810
cal:CAALFM_C207560WA
cgr:2891166
kla:KLLA0_F21758g
sce:YDR334W
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.940
Rank 1 · TkA08G203200 · TK1151
Cytoplasm0.128
Rank 2 · TkA08G203200 · TK1151
Cell membrane0.022
Rank 3 · TkA08G203200 · TK1151
Mitochondrion0.019
Rank 4 · TkA08G203200 · TK1151
Endoplasmic reticulum0.010
Rank 5 · TkA08G203200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07529HSA26-92 aa
PF13892DBINO33-145 aa
PF04362Iron_traffic90-137 aa
PF07529HSA92-109 aa
PF00270DEAD92-145 aa
PF00271Helicase_C302-339 aa
PF04851ResIII463-624 aa
PF00176SNF2-rel_dom468-753 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G203200PF07529HSA26922.5e-1350.8
TkA08G203200PF13892DBINO331450.006617.5
TkA08G203200PF04362Iron_traffic901372.09.0
TkA08G203200PF07529HSA921092.5e-1350.8
TkA08G203200PF00270DEAD921457.4e-0936.3
TkA08G203200PF00271Helicase_C3023391.3e-2796.9
TkA08G203200PF04851ResIII4636244e-1247.1
TkA08G203200PF00176SNF2-rel_dom4687532.8e-90303.1
TkA08G203200PF00270DEAD4856257.4e-0936.3
TkA08G203200PF00271Helicase_C5075711.3e-2796.9
TkA08G203200PF00270DEAD8388657.4e-0936.3
TkA08G203200PF00271Helicase_C99211041.3e-2796.9
TkA08G203200PF13892DBINO112011410.006617.5
TkA08G203200PF04362Iron_traffic126012972.09.0
TkA08G203200PF04362Iron_traffic134013932.09.0
TkA08G203200PF13892DBINO136414140.006617.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q7X9V2Arabidopsis thalianasp|Q7X9V2|PIE1_ARATH Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 156.400%Swiss-ProtHigh

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