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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G195270
Reference: TK1151 Chr: Chr08 Coordinates: 50999364-50999990 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

390 bp · TkA08G195270|TK1151|cDNA

ATGGAAGGGGCATTTTCAGTTTTTCAGGCAACGGCAAGAGCCTGTCACTGTCGAAGAATGTGGTTGTGGCCGGAGGTGTCTTTGAGTACGAAATTAACATTTATGTTGAATTCATCAGTTTATAAGGGTGAACGGTGTCCACCTTCTTCAACCCGCTGTCATCCTGAACCCGCTGAACCCGAAGAAGGAGGTATCGTCGTCTTCCCGAGCCCGCCGCCTGCTAACCCGCTACCTGCGATTTCCTTCTTCACCCGCCAGCT...

CDS

Download CDS FASTA

390 bp · TkA08G195270|TK1151|CDS

ATGGAAGGGGCATTTTCAGTTTTTCAGGCAACGGCAAGAGCCTGTCACTGTCGAAGAATGTGGTTGTGGCCGGAGGTGTCTTTGAGTACGAAATTAACATTTATGTTGAATTCATCAGTTTATAAGGGTGAACGGTGTCCACCTTCTTCAACCCGCTGTCATCCTGAACCCGCTGAACCCGAAGAAGGAGGTATCGTCGTCTTCCCGAGCCCGCCGCCTGCTAACCCGCTACCTGCGATTTCCTTCTTCACCCGCCAGCT...

Protein

Download Protein FASTA

129 aa · TkA08G195270|TK1151|PROTEIN

MEGAFSVFQATARACHCRRMWLWPEVSLSTKLTFMLNSSVYKGERCPPSSTRCHPEPAEPEEGGIVVFPSPPPANPLPAISFFTRQLLRAHEPATTTTSFFNLLSHEPARLQSSIPRTRSLLDTVHPNA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G195270
TK1151 IDTkA08G195270
OH-1004 IDLXL04_009589
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)50.900
Protein coverage (%)TK1151 41.085 / OH-1004 7.981
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G195270
LocationChr08:50999364-50999990 (-)
DescriptionSimilar to At3g47830: Putative DNA glycosylase At3g47830
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009589 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0006284 base-excision repair Biological Process
GO:0006285 base-excision repair, AP site formation Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0040029 epigenetic regulation of gene expression Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0141166 chromosomal 5-methylcytosine DNA demethylation pathway Biological Process
GO:0141169 chromosomal 5-methylcytosine DNA demethylation, direct 5-methylcytosine excision pathway Biological Process
GO:0005634 nucleus Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0003677 DNA binding Molecular Function
KEGG gene cross-reference
ath:AT2G36490
ath:AT3G47830
dosa:Os01g0217900
dosa:Os05g0445900
osa:9271145
sai:Saci_1497
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.482
Rank 1 · TkA08G195270 · TK1151
Cytoplasm0.417
Rank 2 · TkA08G195270 · TK1151
Cell membrane0.117
Rank 3 · TkA08G195270 · TK1151
Endoplasmic reticulum0.080
Rank 4 · TkA08G195270 · TK1151
Mitochondrion0.078
Rank 5 · TkA08G195270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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