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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G194790
Reference: TK1151 Chr: Chr08 Coordinates: 50892120-50895674 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2855 bp · TkA08G194790|TK1151|cDNA

TCGACCTGTTTTCCAAAATCAAATACTCCTTAATTTTTAGGTTGGGAACGGCAATTATATAATACTCGATACTCAAATTTCAGAAATCACACGGAGTCCCTGCCGCCGCATTACCCTAAAGGCCGATGGGGAAAGCAGGTAAGCCGACGGTGAAGTCCTCGCTGTTCGAGAAAGTATTACGCCGCCGCGTACAAGAAACCTACGGTAATGCCCCTCCATCCGTCGACCAACTTGTCCACAGCCTCCGCTCCGATTTCCCC...

CDS

Download CDS FASTA

2478 bp · TkA08G194790|TK1151|CDS

ATGGGGAAAGCAGGTAAGCCGACGGTGAAGTCCTCGCTGTTCGAGAAAGTATTACGCCGCCGCGTACAAGAAACCTACGGTAATGCCCCTCCATCCGTCGACCAACTTGTCCACAGCCTCCGCTCCGATTTCCCCGAATACAGTCGCCACAAGCTCCAACCTTTCACCAGAATGGTGAAACAAACCCTAGATTCCAGCAACAGCAAAGATAGACAGAAATCAAGAAGAAAAGATGAGGACAGCCCATCTTCATTTAATTA...

Protein

Download Protein FASTA

825 aa · TkA08G194790|TK1151|PROTEIN

MGKAGKPTVKSSLFEKVLRRRVQETYGNAPPSVDQLVHSLRSDFPEYSRHKLQPFTRMVKQTLDSSNSKDRQKSRRKDEDSPSSFNYSEEDDDTSPSLRSPMRKKSKKIDSREQRLQMLETKHVAQRRTELQKSSESETDDGEEDRSAVSSSEDDVYSLQFEPEIDLTKSMLRNKYNGSKLNAKSDEKPNNVELEVVTNSNTKETEKVDLMKEGRRVVKPKTQKPNNVSNDDGDGKEDGPRFKDIGGMDAVLEELKTEVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G194790
TK1151 IDTkA08G194790
OH-1004 IDLXL04_032661
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G194790
LocationChr08:50892120-50895674 (-)
DescriptionSimilar to CDC48C: Cell division control protein 48 homolog C
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g01610 Probably functions in cell division and growth processes. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032661 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006364 rRNA processing Biological Process
GO:0015031 protein transport Biological Process
GO:0032092 positive regulation of protein binding Biological Process
GO:0032206 positive regulation of telomere maintenance Biological Process
GO:0042254 ribosome biogenesis Biological Process
GO:0042273 ribosomal large subunit biogenesis Biological Process
GO:0051301 cell division Biological Process
GO:0180023 cytosolic large ribosomal subunit assembly Biological Process
GO:1904749 regulation of protein localization to nucleolus Biological Process
GO:1905323 telomerase holoenzyme complex assembly Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
KEGG gene cross-reference
ath:AT3G01610
hsa:4931
spo:2539968
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.492
Rank 1 · TkA08G194790 · TK1151
Cytoplasm0.371
Rank 2 · TkA08G194790 · TK1151
Cell membrane0.069
Rank 3 · TkA08G194790 · TK1151
Mitochondrion0.066
Rank 4 · TkA08G194790 · TK1151
Endoplasmic reticulum0.061
Rank 5 · TkA08G194790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13401AAA_224-67 aa
PF09848SLFN-g3_helicase4-63 aa
PF16725Nucleolin_bd12-64 aa
PF12775AAA_715-73 aa
PF24905TTC3_9th33-62 aa
PF01443Viral_helicase1171-205 aa
PF06745ATPase273-294 aa
PF07724AAA_2275-399 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G194790PF13401AAA_224671.2e-1042.5
TkA08G194790PF09848SLFN-g3_helicase4630.00716.4
TkA08G194790PF16725Nucleolin_bd12641.3e-0525.6
TkA08G194790PF12775AAA_715730.0005820.2
TkA08G194790PF24905TTC3_9th33620.1212.9
TkA08G194790PF01443Viral_helicase11712055.3e-0627.1
TkA08G194790PF06745ATPase2732948.5e-0626.0
TkA08G194790PF07724AAA_22753992.1e-1144.8
TkA08G194790PF02367TsaE2753030.0001722.3
TkA08G194790PF13191AAA_162763024.2e-1041.1
TkA08G194790PF05496RuvB_N2773611.6e-1454.6
TkA08G194790PF00005ABC_tran2783015.2e-0524.6
TkA08G194790PF06068TIP492793201.5e-1041.5
TkA08G194790PF01695IstB_IS212793461.1e-0629.1
TkA08G194790PF00158Sigma54_activat2793010.003717.7
TkA08G194790PF00004AAA2804201.9e-85284.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SS94Arabidopsis thalianasp|Q9SS94|CD48C_ARATH Cell division control protein 48 homolog C49.900%Swiss-ProtMedium

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