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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G191880
Reference: TK1151 Chr: Chr08 Coordinates: 50132051-50133941 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1281 bp · TkA08G191880|TK1151|cDNA

ATGGCATGTAAAGTGTTCGATAGAATGCTTGAAAGAAACGTTGTTTCTTGGACGTCTCTCATGTGTGGGTACCTAAATTCAGGCAACGCCAATAGCTCCTTATCACTCTTATGTCAAATGCAGATACAAGGAAAATTACCCGATGAGTTTACTTTCACGAGCACTTTAAAAGCTTGTGCTGGTCTTGGAGATATAAACTCTGGGAGACAAATCCACGGTTATTTGATTTCTACGGGTTTTCTTTTGTCACAGCAAACTAT...

CDS

Download CDS FASTA

1281 bp · TkA08G191880|TK1151|CDS

ATGGCATGTAAAGTGTTCGATAGAATGCTTGAAAGAAACGTTGTTTCTTGGACGTCTCTCATGTGTGGGTACCTAAATTCAGGCAACGCCAATAGCTCCTTATCACTCTTATGTCAAATGCAGATACAAGGAAAATTACCCGATGAGTTTACTTTCACGAGCACTTTAAAAGCTTGTGCTGGTCTTGGAGATATAAACTCTGGGAGACAAATCCACGGTTATTTGATTTCTACGGGTTTTCTTTTGTCACAGCAAACTAT...

Protein

Download Protein FASTA

426 aa · TkA08G191880|TK1151|PROTEIN

MACKVFDRMLERNVVSWTSLMCGYLNSGNANSSLSLLCQMQIQGKLPDEFTFTSTLKACAGLGDINSGRQIHGYLISTGFLLSQQTIVSVMDMYLKCGVIEDADKVFDEMPKRNVVSWTVMITGYGKHGLGKEAIDIFEKMKSENISPDGVTYLAILSSCSHSGLVDKSQEYFSRLQNDPTIKPNVEHYACMVDLLGRSGHLKEARNLINNMPVKPNSGIWQTLLSACKLHKDLEMGREVGEILLKMDDLTTVNYVMMSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G191880
TK1151 IDTkA08G191880
OH-1004 IDLXL04_032628
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)67.000
Protein coverage (%)TK1151 100.000 / OH-1004 96.631
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G191880
LocationChr08:50132051-50133941 (-)
DescriptionSimilar to PCMP-H86: Putative pentatricopeptide repeat-containing protein At3g15130
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g15130 Putative pentatricopeptide repeat-containing protein At3g15130. No verified direct reference in this release
At4g30700 Pentatricopeptide repeat-containing protein At4g30700. No verified direct reference in this release
At5g40410 Pentatricopeptide repeat-containing protein At5g40410, mitochondrial. No verified direct reference in this release
At4g18750 Plays a major role in single RNA editing events in chloroplasts.
Identification of two pentatricopeptide repeat genes required for RNA editing and zinc binding by C-terminal cytidine deaminase-like domains.2013 · DOI: 10.1074/jbc.m113.485755
At3g23330 Putative pentatricopeptide repeat-containing protein At3g23330. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032628 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0010087 phloem or xylem histogenesis Biological Process
GO:0010305 leaf vascular tissue pattern formation Biological Process
GO:0010588 cotyledon vascular tissue pattern formation Biological Process
GO:0048366 leaf development Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G15130
ath:AT4G13650
ath:AT4G18750
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.648
Rank 1 · TkA08G191880 · TK1151
Plastid0.203
Rank 2 · TkA08G191880 · TK1151
Nucleus0.057
Rank 3 · TkA08G191880 · TK1151
Cytoplasm0.040
Rank 4 · TkA08G191880 · TK1151
Peroxisome0.008
Rank 5 · TkA08G191880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_21-14 aa
PF01535PPR2-14 aa
PF12854PPR_12-9 aa
PF12854PPR_19-40 aa
PF13812PPR_310-60 aa
PF13041PPR_212-60 aa
PF01535PPR15-41 aa
PF29070MSC6_N18-64 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G191880PF13041PPR_21141.7e-36124.8
TkA08G191880PF01535PPR2143.9e-32108.9
TkA08G191880PF12854PPR_1293.3e-1969.0
TkA08G191880PF12854PPR_19403.3e-1969.0
TkA08G191880PF13812PPR_310601.4e-1248.2
TkA08G191880PF13041PPR_212601.7e-36124.8
TkA08G191880PF01535PPR15413.9e-32108.9
TkA08G191880PF29070MSC6_N18641.3e-0938.4
TkA08G191880PF23276TPR_2418541.5e-0525.6
TkA08G191880PF17177PPR_long251106.6e-0626.4
TkA08G191880PF12854PPR_144543.3e-1969.0
TkA08G191880PF01535PPR50723.9e-32108.9
TkA08G191880PF23276TPR_24551151.5e-0525.6
TkA08G191880PF29070MSC6_N821741.3e-0938.4
TkA08G191880PF13041PPR_2891151.7e-36124.8
TkA08G191880PF01535PPR891153.9e-32108.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0C898Arabidopsis thalianasp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g1513051.500%Swiss-ProtHigh
Q9SUH6Arabidopsis thalianasp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g3070042.600%Swiss-ProtMedium
Q9FND6Arabidopsis thalianasp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410, mitochondrial40.500%Swiss-ProtMedium
Q9SN39Arabidopsis thalianasp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein DOT4, chloroplastic40.200%Swiss-ProtMedium
Q9LW63Arabidopsis thalianasp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g2333040.900%Swiss-ProtMedium

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