TkA08G190470 | RubberDandelionOmics

Gene overview

TkA08G190470

Reference: TK1151 Chr: Chr08 Coordinates: 49760521-49764051 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1845 bp · TkA08G190470|TK1151|cDNA

CAAGACTTCTGCAAGTACTACGCATTCCAGTCTACAGCCTCTCTCTCTCTCTCTCCGAAATTTGCAAAAGGGAGGCATTTGGGGTTAATTTATTATAAAAATGCCGGTGAAAACTGGCGTTGTGCTATTGATCGTCTTGGTCGTGGCGGTTACGGCTGCTTCGGTGGCGTATGGCGGCAGTGGTGAATATTCAACGTCGATTCTAACTTTAGTGAGGGCTTTTCCGGCGAACAAGACAGTTGAGCTGGAAATCCTCAAAA...

CDS

Download CDS FASTA

1491 bp · TkA08G190470|TK1151|CDS

ATGCCGGTGAAAACTGGCGTTGTGCTATTGATCGTCTTGGTCGTGGCGGTTACGGCTGCTTCGGTGGCGTATGGCGGCAGTGGTGAATATTCAACGTCGATTCTAACTTTAGTGAGGGCTTTTCCGGCGAACAAGACAGTTGAGCTGGAAATCCTCAAAACACGTGACCGTGTCAGACACGCCCGAATCCTGCAAGGCTTCGGCGGTGGCGTTGTCGACTTCACCGTCTCCGGTACCTCTGATCCTTACTACGGCGGGTT...

Protein

Download Protein FASTA

496 aa · TkA08G190470|TK1151|PROTEIN

MPVKTGVVLLIVLVVAVTAASVAYGGSGEYSTSILTLVRAFPANKTVELEILKTRDRVRHARILQGFGGGVVDFTVSGTSDPYYGGLYFTKVKLGSPPREFNVQIDTGSDILWVTCSSCIDCPELSGFGIPLNFFDSATSSTASPVSCSDSICSSNFKTADASCSDQNNQCSYQFNYADDSGTSGHYVTDFLYLDTVVDPSTITNSSAPITFGCSTYQSGGLTKSDKAMDGIFGFGQHDLSVISQLSAKGITPKVFSHCL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G190470`
TK1151 ID	TkA08G190470
OH-1004 ID	LXL04_032595
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G190470

Location Chr08:49760521-49764051 (-)

Description Similar to At1g65240: Aspartic proteinase-like protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g36260`	Displays aspartic proteolytic activity.	No verified direct reference in this release
`At1g65240`	Displays aspartic proteolytic activity.	No verified direct reference in this release
`At5g33340`	Involved in salicylic acid-dependent inducible resistance responses.	An extracellular aspartic protease functions in Arabidopsis disease resistance signaling.2004 · DOI: 10.1038/sj.emboj.7600086
`At3g12700`	Aspartic proteinase that can use azocasein as substrate and regulates endogenous sugar levels (e.g. sucrose, glucose and fructose) by modulating starch accumulation and remobilization.	Misexpression of a chloroplast aspartyl protease leads to severe growth defects and alters carbohydrate metabolism in Arabidopsis.2012 · DOI: 10.1104/pp.112.204016

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032595 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009555 pollen development Biological Process

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0030163 protein catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0090406 pollen tube Cellular Component

KEGG gene cross-reference

ath:AT1G65240

ath:AT2G17760

ath:AT5G36260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.486

Rank 1 · TkA08G190470 · TK1151

Extracellular0.168

Rank 2 · TkA08G190470 · TK1151

Endoplasmic reticulum0.121

Rank 3 · TkA08G190470 · TK1151

Lysosome / Vacuole0.112

Rank 4 · TkA08G190470 · TK1151

Cytoplasm0.106

Rank 5 · TkA08G190470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14543TAXi_N88-273 aa

PF00026Asp88-442 aa

PF14541TAXi_C291-443 aa

PF14543TAXi_N322-336 aa

PF24505Ig_TMEM131homol_6th359-379 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G190470	`PF14543`	TAXi_N	88	273	8.5e-42	144.0
TkA08G190470	`PF00026`	Asp	88	442	4.1e-29	102.7
TkA08G190470	`PF14541`	TAXi_C	291	443	2.1e-24	86.9
TkA08G190470	`PF14543`	TAXi_N	322	336	8.5e-42	144.0
TkA08G190470	`PF24505`	Ig_TMEM131homol_6th	359	379	0.32	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q4V3D2`	Arabidopsis thaliana	sp\|Q4V3D2\|ASP36_ARATH Aspartic proteinase 36	38.000%	Swiss-Prot	Medium
`Q9S9K4`	Arabidopsis thaliana	sp\|Q9S9K4\|ASP39_ARATH Aspartic proteinase 39	36.500%	Swiss-Prot	Medium
`Q6XBF8`	Arabidopsis thaliana	sp\|Q6XBF8\|CDR1_ARATH Aspartic proteinase CDR1	31.200%	Swiss-Prot	Medium
`Q9LTW4`	Arabidopsis thaliana	sp\|Q9LTW4\|NANA_ARATH Aspartic proteinase NANA, chloroplast	24.400%	Swiss-Prot	Low

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