TkA08G187730 | RubberDandelionOmics

Gene overview

TkA08G187730

Reference: TK1151 Chr: Chr08 Coordinates: 49034578-49035627 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

879 bp · TkA08G187730|TK1151|cDNA

ATGAAAGACGATAGGGTTTTGGAGAGATTAAGCAAACTTCTCCGAGTTATCAACCGTGGAGTTTTGTGTAGGCCCGCCGGAACTGCAAAAACCAACAAAATGATACTCGTCGCACTTTACCTTGTTCTACACGAAAGCTTTCGAGTTTACGCGGATATATGGGAAGCGTTAGGCGTTTTACTCGACCGGCTCCCCGAAATGGAATACGCGAACTGCGTGAAAACCTACGATCAGTTTGTCAACGCCGCTAAAACAATCGA...

CDS

Download CDS FASTA

879 bp · TkA08G187730|TK1151|CDS

ATGAAAGACGATAGGGTTTTGGAGAGATTAAGCAAACTTCTCCGAGTTATCAACCGTGGAGTTTTGTGTAGGCCCGCCGGAACTGCAAAAACCAACAAAATGATACTCGTCGCACTTTACCTTGTTCTACACGAAAGCTTTCGAGTTTACGCGGATATATGGGAAGCGTTAGGCGTTTTACTCGACCGGCTCCCCGAAATGGAATACGCGAACTGCGTGAAAACCTACGATCAGTTTGTCAACGCCGCTAAAACAATCGA...

Protein

Download Protein FASTA

292 aa · TkA08G187730|TK1151|PROTEIN

MKDDRVLERLSKLLRVINRGVLCRPAGTAKTNKMILVALYLVLHESFRVYADIWEALGVLLDRLPEMEYANCVKTYDQFVNAAKTIDDLVDFYKWSKESGVARACELNTAAIENGPPQPGPTPPQQTTGDLLNLKDDTQPPNNHGNTLELALLSELPAGESNTGVMKTDWELALVESIAVSGLGRNVTPAVTTSVLALPAPNEPIQKVDPQDPFAASLMVPPPPYVQLADLEKKQSFLVQEQQVWQPYGGNTMVGVGGVG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G187730`
TK1151 ID	TkA08G187730
OH-1004 ID	LXL04_002707
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	80.800
Protein coverage (%)	TK1151 100.000 / OH-1004 19.190 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G187730

Location Chr08:49034578-49035627 (-)

Description Similar to TPR4: Topless-related protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g32285`	Probable clathrin assembly protein At4g32285.	No verified direct reference in this release
`At2g25430`	Putative clathrin assembly protein At2g25430.	No verified direct reference in this release
`At1g03050`	Putative clathrin assembly protein At1g03050.	No verified direct reference in this release
`At4g02650`	Putative clathrin assembly protein At4g02650.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002707 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009733 response to auxin Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0009938 negative regulation of gibberellic acid mediated signaling pathway Biological Process

GO:0010051 xylem and phloem pattern formation Biological Process

GO:0010072 primary shoot apical meristem specification Biological Process

GO:0010229 inflorescence development Biological Process

GO:0010336 gibberellic acid homeostasis Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

KEGG gene cross-reference

ath:AT1G15750

ath:AT1G80490

ath:AT3G15880

dosa:Os03g0254700

dosa:Os08g0162100

osa:4332285

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.531

Rank 1 · TkA08G187730 · TK1151

Cell membrane0.396

Rank 2 · TkA08G187730 · TK1151

Nucleus0.224

Rank 3 · TkA08G187730 · TK1151

Golgi apparatus0.071

Rank 4 · TkA08G187730 · TK1151

Endoplasmic reticulum0.047

Rank 5 · TkA08G187730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07651ANTH2-106 aa

PF23271HEAT_GCN132-84 aa

PF28331PARI_N68-99 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G187730	`PF07651`	ANTH	2	106	4.8e-19	69.1
TkA08G187730	`PF23271`	HEAT_GCN1	32	84	0.28	12.0
TkA08G187730	`PF28331`	PARI_N	68	99	0.32	11.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8S9J8`	Arabidopsis thaliana	sp\|Q8S9J8\|CAP1_ARATH Probable clathrin assembly protein At4g32285	34.100%	Swiss-Prot	Medium
`Q8LF20`	Arabidopsis thaliana	sp\|Q8LF20\|CAP2_ARATH Putative clathrin assembly protein At2g25430	35.100%	Swiss-Prot	Medium
`Q9SA65`	Arabidopsis thaliana	sp\|Q9SA65\|CAP4_ARATH Putative clathrin assembly protein At1g03050	36.800%	Swiss-Prot	Low
`Q8GX47`	Arabidopsis thaliana	sp\|Q8GX47\|CAP3_ARATH Putative clathrin assembly protein At4g02650	37.700%	Swiss-Prot	Low

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