TkA08G181750 | RubberDandelionOmics

Gene overview

TkA08G181750

Reference: TK1151 Chr: Chr08 Coordinates: 47507527-47508498 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

972 bp · TkA08G181750|TK1151|cDNA

ATGAAAACCCACCACCCGAAACTTAAACCTCCACCTCGGCCACTCTTCTCTTGTGGCTTCTTTCGCTACTGCACTCAATCTGTAATCAGCCCCACCAATCCGAGTCCACCGGTGCTCCCTCATTCAGAACCCACGCCACCGCCACCGCCACCACCACCGCAAACCCACTCCGAGTCTTCTTCTTCTTCCAATACTTCACAAAGCTTTACTCAATGGAGATTCTCTCACACACCCAATTCCCTAACAGACCCATATCCAGA...

CDS

Download CDS FASTA

972 bp · TkA08G181750|TK1151|CDS

ATGAAAACCCACCACCCGAAACTTAAACCTCCACCTCGGCCACTCTTCTCTTGTGGCTTCTTTCGCTACTGCACTCAATCTGTAATCAGCCCCACCAATCCGAGTCCACCGGTGCTCCCTCATTCAGAACCCACGCCACCGCCACCGCCACCACCACCGCAAACCCACTCCGAGTCTTCTTCTTCTTCCAATACTTCACAAAGCTTTACTCAATGGAGATTCTCTCACACACCCAATTCCCTAACAGACCCATATCCAGA...

Protein

Download Protein FASTA

323 aa · TkA08G181750|TK1151|PROTEIN

MKTHHPKLKPPPRPLFSCGFFRYCTQSVISPTNPSPPVLPHSEPTPPPPPPPPQTHSESSSSSNTSQSFTQWRFSHTPNSLTDPYPETTKMHHQSPPPPPPPPPVVISDLQELFHVAELQLSTGLDSDRVKAIYMLQHSLVNPRAAAEGGDLVSCPPAVMRGVLGCLRDKEVAKPATRVLLALCLGECNRHVAVEEGAVGKVVEALVDLDGGAVAERALAALELLCTVAEGAAELRSHALVGPMMVEVMRRMETTRGREN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G181750`
TK1151 ID	TkA08G181750
OH-1004 ID	LXL04_032494
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA08G181750`
Location	Chr08:47507527-47508498 (+)
Description	Similar to PUB26: U-box domain-containing protein 26
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_032494` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0002679 respiratory burst involved in defense response Biological Process GO:0006952 defense response Biological Process GO:0009414 response to water deprivation Biological Process GO:0016567 protein ubiquitination Biological Process GO:0051865 protein autoubiquitination Biological Process GO:0098542 defense response to other organism Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0004842 ubiquitin-protein transferase activity Molecular Function GO:0061630 ubiquitin protein ligase activity Molecular Function GO:0070696 transmembrane receptor protein serine/threonine kinase binding Molecular Function
KEGG gene cross-reference	ath:AT1G49780 ath:AT2G35930 ath:AT3G19380 ath:AT3G52450 ath:AT3G54850 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.500

Rank 1 · TkA08G181750 · TK1151

Cytoplasm0.475

Rank 2 · TkA08G181750 · TK1151

Cell membrane0.145

Rank 3 · TkA08G181750 · TK1151

Endoplasmic reticulum0.082

Rank 4 · TkA08G181750 · TK1151

Golgi apparatus0.028

Rank 5 · TkA08G181750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25598ARM_PUB156-314 aa

PF07845DUF1636175-233 aa

PF07845DUF1636297-315 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G181750	`PF25598`	ARM_PUB	156	314	9.4e-19	68.7
TkA08G181750	`PF07845`	DUF1636	175	233	0.13	13.4
TkA08G181750	`PF07845`	DUF1636	297	315	0.13	13.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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