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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G179900
Reference: TK1151 Chr: Chr08 Coordinates: 47084597-47089135 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2717 bp · TkA08G179900|TK1151|cDNA

GAGTGGGACAACTTATTCTGAACCATATTAGATTTGGTTAAAACGTGTCTTCCATCATTTAAACTCCTTTACAAAAACAAACTGATTAGAATCTTCTGACTAGAAAACACGGACTTAAAACCGTAGTTAACTACAAATGAGAAGTGTGGTGTGGATAAACGTTAATAAACAACACAAAAAAGCGACGTGGCATTGTGCGGTGGCTGGAAAACAGGCCTTTTTAGAAGTGTGGATGGCCACACCAGTCTGATTAACAAAAA...

CDS

Download CDS FASTA

1848 bp · TkA08G179900|TK1151|CDS

ATGGCTCAGCCAAACGGCATAATCCACCACCACCACCACCACCAGCAACCACCGCCACAACCACCACCACCACCTCCCCCACCTTACGATCTTCCCCGTCAAGATCTACTTGCTGACAACAGACGAAAAGACTTCATCAACATCTGCGTCCCACTATGTGAAGCATCAATGAAAGCCGATTGGGAAACCGCAAACCACATAATCGGAAGTCCCGAATACATCCTCCGTTACAGCATCACCGAAAACTGCGAAACCGCGCT...

Protein

Download Protein FASTA

615 aa · TkA08G179900|TK1151|PROTEIN

MAQPNGIIHHHHHHQQPPPQPPPPPPPPYDLPRQDLLADNRRKDFINICVPLCEASMKADWETANHIIGSPEYILRYSITENCETALHVAASAQKSNNNSIEFVQNLVDRMSRADLQLQNKNGNTALCLAAAAGNVEIAKIMVTRNRDLPTIPNGEKMMPLYIAVLFGNVEMVHYLYEESQHMDGPGWTPTNRSWVFLKCIELDLFDFALRILDHHPQLAQNANALCALARKPLAFDEIKPRLVKRIVNSMFCLKVEPVE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G179900
TK1151 IDTkA08G179900
OH-1004 IDLXL04_032511
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G179900
LocationChr08:47084597-47089135 (-)
DescriptionSimilar to NPR4: Ankyrin repeat-containing protein NPR4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032511 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009651 response to salt stress Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT3G12360
ath:AT5G02620
dosa:Os01g0837000
rbe:RBE_1411
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.892
Rank 1 · TkA08G179900 · TK1151
Cytoplasm0.078
Rank 2 · TkA08G179900 · TK1151
Endoplasmic reticulum0.066
Rank 3 · TkA08G179900 · TK1151
Nucleus0.031
Rank 4 · TkA08G179900 · TK1151
Lysosome / Vacuole0.025
Rank 5 · TkA08G179900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13637Ank_480-93 aa
PF13857Ank_581-96 aa
PF12796Ank_282-94 aa
PF00023Ank84-121 aa
PF13606Ank_384-95 aa
PF12796Ank_287-180 aa
PF13637Ank_4107-141 aa
PF13857Ank_5114-148 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G179900PF13637Ank_480936.5e-1349.3
TkA08G179900PF13857Ank_581964.1e-0937.3
TkA08G179900PF12796Ank_282945.1e-1969.4
TkA08G179900PF00023Ank841211.6e-1350.7
TkA08G179900PF13606Ank_384959.8e-0729.3
TkA08G179900PF12796Ank_2871805.1e-1969.4
TkA08G179900PF13637Ank_41071416.5e-1349.3
TkA08G179900PF13857Ank_51141484.1e-0937.3
TkA08G179900PF00023Ank1221431.6e-1350.7
TkA08G179900PF13606Ank_31221469.8e-0729.3
TkA08G179900PF13857Ank_51521774.1e-0937.3
TkA08G179900PF13637Ank_41531766.5e-1349.3
TkA08G179900PF13606Ank_31591789.8e-0729.3
TkA08G179900PF00023Ank1601771.6e-1350.7
TkA08G179900PF13606Ank_33033249.8e-0729.3
TkA08G179900PF12796Ank_23043575.1e-1969.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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