TkA08G173510 | RubberDandelionOmics

Gene overview

TkA08G173510

Reference: TK1151 Chr: Chr08 Coordinates: 45339315-45343720 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2235 bp · TkA08G173510|TK1151|cDNA

ATGGAGTTCAGAAGCAAGGAAGATCTGACATATCTCAACTGGGCAGCCCAGTTTGACAACAAAAACTCAATCAGGCTTCAAGATATAAAGATGAAGATTGCATCATCAAACTTAGCAGATATGAATTTCAAGATGAACTTTATAGCGTTGATGATCAATTCTTTGTGTGAATCAAGCTCGTGCGGGAAGGCAAACTATTCAAATCTAAACTACATCACAGCCGACACTGTGGTCAAAGACATTGATTGGTGTTCATATGT...

CDS

Download CDS FASTA

2235 bp · TkA08G173510|TK1151|CDS

ATGGAGTTCAGAAGCAAGGAAGATCTGACATATCTCAACTGGGCAGCCCAGTTTGACAACAAAAACTCAATCAGGCTTCAAGATATAAAGATGAAGATTGCATCATCAAACTTAGCAGATATGAATTTCAAGATGAACTTTATAGCGTTGATGATCAATTCTTTGTGTGAATCAAGCTCGTGCGGGAAGGCAAACTATTCAAATCTAAACTACATCACAGCCGACACTGTGGTCAAAGACATTGATTGGTGTTCATATGT...

Protein

Download Protein FASTA

744 aa · TkA08G173510|TK1151|PROTEIN

MEFRSKEDLTYLNWAAQFDNKNSIRLQDIKMKIASSNLADMNFKMNFIALMINSLCESSSCGKANYSNLNYITADTVVKDIDWCSYVIDCLLKSKFAYKHSNTAFFVGPAAFLVLLYVDAVKLECIHVQRTRPVICHWTTEKLKFREMFEREMIGGFGTGELNGVFVEEDINEQDYESMALRKKAKLETVVIKGVEKFPQNVRLNLLKEEMCGKVRGDGGQNMVVSLQVDQMDIDGVGGEEPPVGDNIVVGNDNGEAEMD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G173510`
TK1151 ID	TkA08G173510
OH-1004 ID	LXL04_000261
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	27.700
Protein coverage (%)	TK1151 93.952 / OH-1004 68.780 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA08G173510`
Location	Chr08:45339315-45343720 (-)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_000261` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.938

Rank 1 · TkA08G173510 · TK1151

Cytoplasm0.143

Rank 2 · TkA08G173510 · TK1151

Mitochondrion0.026

Rank 3 · TkA08G173510 · TK1151

Cell membrane0.018

Rank 4 · TkA08G173510 · TK1151

Extracellular0.009

Rank 5 · TkA08G173510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29561DUF856610-113 aa

PF29561DUF8566377-414 aa

PF29704YDL186W525-582 aa

PF24824PH_SPT16547-590 aa

PF29561DUF8566566-603 aa

PF24824PH_SPT16605-646 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G173510	`PF29561`	DUF8566	10	113	6.5e-18	66.0
TkA08G173510	`PF29561`	DUF8566	377	414	6.5e-18	66.0
TkA08G173510	`PF29704`	YDL186W	525	582	0.062	14.0
TkA08G173510	`PF24824`	PH_SPT16	547	590	1.8	9.2
TkA08G173510	`PF29561`	DUF8566	566	603	6.5e-18	66.0
TkA08G173510	`PF24824`	PH_SPT16	605	646	1.8	9.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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