TkA08G170680 | RubberDandelionOmics

Gene overview

TkA08G170680

Reference: TK1151 Chr: Chr08 Coordinates: 44626097-44629005 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1845 bp · TkA08G170680|TK1151|cDNA

CTGGGAAGAAAAGAAAGTAAACGGTCAAAATTTTAATCAAGCAGAGATAGATCTTGTGATCTTGACGCTCAAAATTGGACGCTGGGTCGTTCGCAGTCTTGTTCATATAAATCCAGTAAATCCAGTTATTCGATCCTGCATTTAATGAACTGGATTCGCTAAATCAACCAACATTCGATCCAGATTCCCCCCAAAACCTGTTCTTGCTTGATTAAGGAGGGTACAAAATCCAAGAAAATGGATATTAACAGCCCTCCGTA...

CDS

Download CDS FASTA

930 bp · TkA08G170680|TK1151|CDS

ATGGATATTAACAGCCCTCCGTACTACAAGGAGGGCTCGCCATTGCCAACGACCATATCCAAATCGGAAAAACAGCGTTCCAGGTCATCTTCAAGATCTTCAGTACCTTCAATCCTTTTTGCTTTCTTCTCTTGTCTCGCTTGGCTTTACATCGCCGGCAGGTTATGGCAGGATGCTGAAAACAGACTATTGTTATCCCATTTGCTTATGAAGAATACCGCAGAGAGACCAAAAGTTCTTACAGTTGAAGACAAGCTCAT...

Protein

Download Protein FASTA

309 aa · TkA08G170680|TK1151|PROTEIN

MDINSPPYYKEGSPLPTTISKSEKQRSRSSSRSSVPSILFAFFSCLAWLYIAGRLWQDAENRLLLSHLLMKNTAERPKVLTVEDKLMVLGCKDLERRIVETEMEISLAKSQGFLKIKQPGFSSGKKLLAVIGVYTGFGSRLNRRVFRGSWMPTGDSLKKLEERGIVIRFVIGRSPNRGDSLDRNIDEENRTTKDFLILDNHEEADEESSKKAKFFFSTAVQNWDAEFYVKVDDNIGLDLEGLIELLESRRGQDSVYIGCM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G170680`
TK1151 ID	TkA08G170680
OH-1004 ID	LXL04_032383
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	96.300
Protein coverage (%)	TK1151 96.764 / OH-1004 84.463 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G170680

Location Chr08:44626097-44629005 (+)

Description Similar to HPGT3: Hydroxyproline O-galactosyltransferase HPGT3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g25300`	Possesses hydroxyproline O-galactosyltransferase activity.	Identification of three potent hydroxyproline O-galactosyltransferases in Arabidopsis.2015 · DOI: 10.1111/tpj.12764
`At4g32120`	Possesses hydroxyproline O-galactosyltransferase activity.	Identification of three potent hydroxyproline O-galactosyltransferases in Arabidopsis.2015 · DOI: 10.1111/tpj.12764
`At5g53340`	Possesses hydroxyproline O-galactosyltransferase activity.	No verified direct reference in this release
`At1g33430`	Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.	No verified direct reference in this release
`At2g32430`	Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032383 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0010208 pollen wall assembly Biological Process

GO:0010405 arabinogalactan protein metabolic process Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0180062 protein O-linked glycosylation via galactose Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0008378 galactosyltransferase activity Molecular Function

GO:1990714 hydroxyproline O-galactosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G05170

ath:AT1G11730

ath:AT2G25300

ath:AT4G32120

ath:AT5G53340

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.792

Rank 1 · TkA08G170680 · TK1151

Cell membrane0.068

Rank 2 · TkA08G170680 · TK1151

Endoplasmic reticulum0.067

Rank 3 · TkA08G170680 · TK1151

Extracellular0.050

Rank 4 · TkA08G170680 · TK1151

Cytoplasm0.042

Rank 5 · TkA08G170680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16667MPDZ_u1016-39 aa

PF13334DUF409435-111 aa

PF01762Galactosyl_T143-279 aa

PF12072RNase_Y_N184-226 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G170680	`PF16667`	MPDZ_u10	16	39	0.6	11.8
TkA08G170680	`PF13334`	DUF4094	35	111	3.7e-06	28.0
TkA08G170680	`PF01762`	Galactosyl_T	143	279	2.9e-21	76.9
TkA08G170680	`PF12072`	RNase_Y_N	184	226	0.2	11.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q5XEZ1`	Arabidopsis thaliana	sp\|Q5XEZ1\|B3GT9_ARATH Hydroxyproline O-galactosyltransferase HPGT3	72.200%	Swiss-Prot	High
`Q94A05`	Arabidopsis thaliana	sp\|Q94A05\|B3GTA_ARATH Hydroxyproline O-galactosyltransferase HPGT2	72.000%	Swiss-Prot	High
`Q94F27`	Arabidopsis thaliana	sp\|Q94F27\|B3GTB_ARATH Hydroxyproline O-galactosyltransferase HPGT1	42.300%	Swiss-Prot	Medium
`Q9C809`	Arabidopsis thaliana	sp\|Q9C809\|B3GT8_ARATH Probable beta-1,3-galactosyltransferase 8	44.700%	Swiss-Prot	Medium
`Q9ZV71`	Arabidopsis thaliana	sp\|Q9ZV71\|B3GT3_ARATH Probable beta-1,3-galactosyltransferase 3	40.100%	Swiss-Prot	Medium

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