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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G169910
Reference: TK1151 Chr: Chr08 Coordinates: 44448425-44450786 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1621 bp · TkA08G169910|TK1151|cDNA

CCTCTTCATATTGCAGCTGTTGTTGGCAACACTACGGCTGTTAAAATCTTGGTGGATAAAAACCATACTCTTTTGTATGCTAAAGACGTGGACGGCCTATTGCCTATTCACAGAGCTATTATTAATTCTCATAGTGATACTTTTTTATATTTATTGGATGTCACCAAAGGCAATGAATATCCTTTTACATTTACCGGGAACTTGGGCGTTACACTTCTGTCCAGTGTTATTTTTGCTGGATATTTTGATATAGCACTTGA...

CDS

Download CDS FASTA

1566 bp · TkA08G169910|TK1151|CDS

CCTCTTCATATTGCAGCTGTTGTTGGCAACACTACGGCTGTTAAAATCTTGGTGGATAAAAACCATACTCTTTTGTATGCTAAAGACGTGGACGGCCTATTGCCTATTCACAGAGCTATTATTAATTCTCATAGTGATACTTTTTTATATTTATTGGATGTCACCAAAGGCAATGAATATCCTTTTACATTTACCGGGAACTTGGGCGTTACACTTCTGTCCAGTGTTATTTTTGCTGGATATTTTGATATAGCACTTGA...

Protein

Download Protein FASTA

521 aa · TkA08G169910|TK1151|PROTEIN

PLHIAAVVGNTTAVKILVDKNHTLLYAKDVDGLLPIHRAIINSHSDTFLYLLDVTKGNEYPFTFTGNLGVTLLSSVIFAGYFDIALDLITHYPDLATTIPSDDKDAPLMVIARKADAFESGCRLGFFDSLIYKYAPIKLVNLNSNKKPGETDFLSSALQEVGFLVWKAVGRIVPHITHIQKTKLVHHQAVALVKCLCQEISALNLQSHWKHYSEPIIEASSNGAYEVVQEIADTFPQAIWYSDHNRHYMVQLAILHRCEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G169910
TK1151 IDTkA08G169910
OH-1004 IDLXL04_032367
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)98.300
Protein coverage (%)TK1151 100.000 / OH-1004 62.847
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G169910
LocationChr08:44448425-44450786 (+)
DescriptionSimilar to ITN1: Ankyrin repeat-containing protein ITN1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032367 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000281 mitotic cytokinesis Biological Process
GO:0006310 DNA recombination Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006508 proteolysis Biological Process
GO:0007009 plasma membrane organization Biological Process
GO:0007165 signal transduction Biological Process
GO:0007528 neuromuscular junction development Biological Process
GO:0009651 response to salt stress Biological Process
GO:0010628 positive regulation of gene expression Biological Process
GO:0010650 positive regulation of cell communication by electrical coupling Biological Process
GO:0010765 positive regulation of sodium ion transport Biological Process
GO:0010960 magnesium ion homeostasis Biological Process
KEGG gene cross-reference
ath:AT3G12360
dosa:Os01g0837000
rno:361833
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.895
Rank 1 · TkA08G169910 · TK1151
Cytoplasm0.078
Rank 2 · TkA08G169910 · TK1151
Endoplasmic reticulum0.063
Rank 3 · TkA08G169910 · TK1151
Lysosome / Vacuole0.025
Rank 4 · TkA08G169910 · TK1151
Nucleus0.023
Rank 5 · TkA08G169910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12796Ank_21-53 aa
PF13606Ank_31-21 aa
PF13857Ank_51-39 aa
PF00023Ank1-20 aa
PF13637Ank_42-52 aa
PF13606Ank_331-53 aa
PF00023Ank31-52 aa
PF13857Ank_532-52 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G169910PF12796Ank_21531.5e-0835.8
TkA08G169910PF13606Ank_31213e-0524.7
TkA08G169910PF13857Ank_51390.0003721.5
TkA08G169910PF00023Ank1200.001619.4
TkA08G169910PF13637Ank_42520.0001422.8
TkA08G169910PF13606Ank_331533e-0524.7
TkA08G169910PF00023Ank31520.001619.4
TkA08G169910PF13857Ank_532520.0003721.5
TkA08G169910PF13606Ank_369953e-0524.7
TkA08G169910PF13637Ank_469890.0001422.8
TkA08G169910PF13606Ank_31861983e-0524.7
TkA08G169910PF12796Ank_21912341.5e-0835.8
TkA08G169910PF13857Ank_52142320.0003721.5
TkA08G169910PF13606Ank_32152333e-0524.7
TkA08G169910PF00023Ank2152300.001619.4
TkA08G169910PF13637Ank_42172290.0001422.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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