TkA08G169080 | RubberDandelionOmics

Gene overview

TkA08G169080

Reference: TK1151 Chr: Chr08 Coordinates: 44211936-44216782 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1302 bp · TkA08G169080|TK1151|cDNA

AAAAGAAGCACTTGGTAGAAACATCATTATTTCAAAAGCTCGGGGGGTATTTCGTATATCTGGATGTTGAGGCCTTGAGGTTGAGCCGTTGAGGGTCGCCGGATCACGGCGACAGGCGACGTCCGGAAGAAGAATGTTTCACGAAACATTTAACCAAAACCTAGCATCTCCGTGGCAGGGACTTACTTTCTCCGCCGCTGCAACGGCCGCCGTTTGAACCACTGCCGCTTTCTTCGCGATGACAGCAAATGAAATATCCG...

CDS

Download CDS FASTA

531 bp · TkA08G169080|TK1151|CDS

ATGCAATGTGCCACAGCCATACATCAAACAATGCTCCAAAACCATCCAATATATGGTGAACTTTACAAAGCAAGGGCATTGGAATCATCAAAAAAAAGAAGAAGAATGAGCACAAGGGGAGATTGGATTTGCGAGTCATGCAATCACTTAAACTTTTACTGGAGGCAATCATGCAGGAGATGCAAAGAGACACGAGCCCAAGACCCAAACTCCACCACCCACACACCCACACCCGGTCCACGGGTCCTGACCTTTAGACC...

Protein

Download Protein FASTA

176 aa · TkA08G169080|TK1151|PROTEIN

MQCATAIHQTMLQNHPIYGELYKARALESSKKRRRMSTRGDWICESCNHLNFYWRQSCRRCKETRAQDPNSTTHTPTPGPRVLTFRPGDWFCDVAMCQAHNFASRRFCFKCGTLKSIPCFGVGFYNPVIGLGYPKQEWKPGDWFCGRPDCYAHNYASRLICFKCKTSRESLTNASN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G169080`
TK1151 ID	TkA08G169080
OH-1004 ID	LXL04_018268
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	40.400
Protein coverage (%)	TK1151 73.864 / OH-1004 55.794 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA08G169080`
Location	Chr08:44211936-44216782 (+)
Description	Similar to ZRANB2: Zinc finger Ran-binding domain-containing protein 2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018268` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006396 RNA processing Biological Process GO:0031445 regulation of heterochromatin formation Biological Process GO:0071502 cellular response to temperature stimulus Biological Process GO:0005634 nucleus Cellular Component GO:0005694 chromosome Cellular Component GO:0005737 cytoplasm Cellular Component GO:0010494 cytoplasmic stress granule Cellular Component GO:0140453 protein aggregate center Cellular Component GO:0000175 3'-5'-RNA exonuclease activity Molecular Function GO:0001530 lipopolysaccharide binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference	afm:AFUA_5G02160 gga:424717 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.626

Rank 1 · TkA08G169080 · TK1151

Cytoplasm0.337

Rank 2 · TkA08G169080 · TK1151

Mitochondrion0.095

Rank 3 · TkA08G169080 · TK1151

Cell membrane0.035

Rank 4 · TkA08G169080 · TK1151

Plastid0.033

Rank 5 · TkA08G169080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08273Zn_Ribbon_Prim38-48 aa

PF00641Zn_ribbon_RanBP40-62 aa

PF28694SCO2_C40-63 aa

PF22926C1-like_CT43-49 aa

PF12773DZR44-63 aa

PF22926C1-like_CT55-63 aa

PF08273Zn_Ribbon_Prim58-62 aa

PF00641Zn_ribbon_RanBP86-116 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G169080	`PF08273`	Zn_Ribbon_Prim	38	48	1.1	10.3
TkA08G169080	`PF00641`	Zn_ribbon_RanBP	40	62	2.2e-13	49.9
TkA08G169080	`PF28694`	SCO2_C	40	63	1.8	9.3
TkA08G169080	`PF22926`	C1-like_CT	43	49	6.6	7.5
TkA08G169080	`PF12773`	DZR	44	63	0.049	14.5
TkA08G169080	`PF22926`	C1-like_CT	55	63	6.6	7.5
TkA08G169080	`PF08273`	Zn_Ribbon_Prim	58	62	1.1	10.3
TkA08G169080	`PF00641`	Zn_ribbon_RanBP	86	116	2.2e-13	49.9
TkA08G169080	`PF08273`	Zn_Ribbon_Prim	88	94	1.1	10.3
TkA08G169080	`PF12773`	DZR	97	114	0.049	14.5
TkA08G169080	`PF22926`	C1-like_CT	101	112	6.6	7.5
TkA08G169080	`PF08273`	Zn_Ribbon_Prim	105	112	1.1	10.3
TkA08G169080	`PF28694`	SCO2_C	113	126	1.8	9.3
TkA08G169080	`PF00641`	Zn_ribbon_RanBP	139	169	2.2e-13	49.9
TkA08G169080	`PF08273`	Zn_Ribbon_Prim	141	145	1.1	10.3
TkA08G169080	`PF12773`	DZR	148	167	0.049	14.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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