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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G164100
Reference: TK1151 Chr: Chr08 Coordinates: 42857897-42859596 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1621 bp · TkA08G164100|TK1151|cDNA

GAAAGACTAGATTTATGTAGGAATCTTGGTGACTTTACTCGATCCAAATCATGTTGTCGTCGGCGGCGCCTTCAATTTCTTGCCCGTTTCACAACCGCAACCGCAAAGGTAACAACAACAACCAGAGTCACAATTACGCCATTGTTGTTCCTCCTCGATTCGTAATTCGATGTGCAATGACGTCAGCTTCTTCGCCAAAGAAGAACAAACTCTGGAAGCAAGGCGAGCACCCGGGACACGTATCGTCCTCTCCAAAACCC...

CDS

Download CDS FASTA

1437 bp · TkA08G164100|TK1151|CDS

ATGTTGTCGTCGGCGGCGCCTTCAATTTCTTGCCCGTTTCACAACCGCAACCGCAAAGGTAACAACAACAACCAGAGTCACAATTACGCCATTGTTGTTCCTCCTCGATTCGTAATTCGATGTGCAATGACGTCAGCTTCTTCGCCAAAGAAGAACAAACTCTGGAAGCAAGGCGAGCACCCGGGACACGTATCGTCCTCTCCAAAACCCAACAGACGAACGCCGATTAAGAACATTAAGAAGAAGCTCGATCGTAAAGC...

Protein

Download Protein FASTA

478 aa · TkA08G164100|TK1151|PROTEIN

MLSSAAPSISCPFHNRNRKGNNNNQSHNYAIVVPPRFVIRCAMTSASSPKKNKLWKQGEHPGHVSSSPKPNRRTPIKNIKKKLDRKANLNPWVNTVTEALSESIDVKHWSRALQVFEMLREQPFYQPKEGTYMKLIVLLGRCGQPKHARYLFDTMLQEGIEPTSQLYTALLAAYCRSNLIDEAFKILNQMKTLPLCQPDVYTFSILMKACVDASRFELVESIYHQMAERSITPNTVTQNTVLAGYGKAGKFQEMEKLLQT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G164100
TK1151 IDTkA08G164100
OH-1004 IDLXL04_032299
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G164100
LocationChr08:42857897-42859596 (+)
DescriptionSimilar to EMB2750: Pentatricopeptide repeat-containing protein At3g06430, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g06430 Pentatricopeptide repeat-containing protein At3g06430, chloroplastic. No verified direct reference in this release
At3g53170 Pentatricopeptide repeat-containing protein At3g53170. No verified direct reference in this release
At5g48730 Pentatricopeptide repeat-containing protein At5g48730, chloroplastic. No verified direct reference in this release
At5g25630 Pentatricopeptide repeat-containing protein At5g25630. No verified direct reference in this release
At1g03540 Pentatricopeptide repeat-containing protein At1g03540. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032299 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000373 Group II intron splicing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0006417 regulation of translation Biological Process
GO:0009553 embryo sac development Biological Process
GO:0009555 pollen development Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0048868 pollen tube development Biological Process
GO:0005730 nucleolus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003727 single-stranded RNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G06430
ath:AT3G53170
ath:AT5G48730
zma:100126361
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.665
Rank 1 · TkA08G164100 · TK1151
Mitochondrion0.223
Rank 2 · TkA08G164100 · TK1151
Nucleus0.058
Rank 3 · TkA08G164100 · TK1151
Cytoplasm0.023
Rank 4 · TkA08G164100 · TK1151
Cell membrane0.009
Rank 5 · TkA08G164100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N57-105 aa
PF12921ATP1373-116 aa
PF13812PPR_379-122 aa
PF29834SOV1_C79-121 aa
PF26719TPR_Atp25_C86-122 aa
PF29070MSC6_N94-188 aa
PF13041PPR_2107-119 aa
PF17177PPR_long107-238 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G164100PF29070MSC6_N571051.4e-2281.1
TkA08G164100PF12921ATP13731165.9e-0626.9
TkA08G164100PF13812PPR_3791227.2e-43145.2
TkA08G164100PF29834SOV1_C791216.8e-0522.7
TkA08G164100PF26719TPR_Atp25_C861220.410.6
TkA08G164100PF29070MSC6_N941881.4e-2281.1
TkA08G164100PF13041PPR_21071194.8e-56187.4
TkA08G164100PF17177PPR_long1072385.5e-1865.8
TkA08G164100PF23276TPR_241071238.4e-1865.3
TkA08G164100PF13428TPR_141071210.004118.4
TkA08G164100PF01535PPR1091215.7e-47155.4
TkA08G164100PF13041PPR_21281654.8e-56187.4
TkA08G164100PF23276TPR_241292568.4e-1865.3
TkA08G164100PF01535PPR1311605.7e-47155.4
TkA08G164100PF13812PPR_31311747.2e-43145.2
TkA08G164100PF13428TPR_141321490.004118.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SQU6Arabidopsis thalianasp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430, chloroplastic62.400%Swiss-ProtHigh
Q9SCP4Arabidopsis thalianasp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g5317039.000%Swiss-ProtLow
Q9FKC3Arabidopsis thalianasp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730, chloroplastic41.800%Swiss-ProtLow
Q8GZ63Arabidopsis thalianasp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g2563028.500%Swiss-ProtLow
Q9LR69Arabidopsis thalianasp|Q9LR69|PPR8_ARATH Pentatricopeptide repeat-containing protein At1g0354029.100%Swiss-ProtLow

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