TkA08G164000 | RubberDandelionOmics

Gene overview

TkA08G164000

Reference: TK1151 Chr: Chr08 Coordinates: 42815025-42815849 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

825 bp · TkA08G164000|TK1151|cDNA

ATGCATCATTTGGAAGAAGTGGACGACATGTCATTAAGGTCAGTTGAATATGTAGTGTTTGATGAAGCAGATAGTCTTTTCAGCATGGGGTTTGCTGAACAGCTACACAGAATCCTTCAACAGTTAAGTGATAACAGACAGACATTACTCTTTAGTGCCACTTTACCTAGTGCATTAGCAGAGTTTGCAAAAGCCGGTCTGCGGGACCCGCAACTCGTTCGCCTTGACTTGGAGACCAAAATCAGCCCCGATTTAAAGCT...

CDS

Download CDS FASTA

825 bp · TkA08G164000|TK1151|CDS

ATGCATCATTTGGAAGAAGTGGACGACATGTCATTAAGGTCAGTTGAATATGTAGTGTTTGATGAAGCAGATAGTCTTTTCAGCATGGGGTTTGCTGAACAGCTACACAGAATCCTTCAACAGTTAAGTGATAACAGACAGACATTACTCTTTAGTGCCACTTTACCTAGTGCATTAGCAGAGTTTGCAAAAGCCGGTCTGCGGGACCCGCAACTCGTTCGCCTTGACTTGGAGACCAAAATCAGCCCCGATTTAAAGCT...

Protein

Download Protein FASTA

274 aa · TkA08G164000|TK1151|PROTEIN

MHHLEEVDDMSLRSVEYVVFDEADSLFSMGFAEQLHRILQQLSDNRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLTFFTLRQEEKLAALLYLIREHIKYDEQSLIFVSTKHHVQFLDHLIRAEGIEPSVCYGDMDQDDRKINVARFRSRKTMFLVVTDVAARGIDIPLLDNVINWDFPPKPKLFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIKPAPTEEDVMRDMKGVMEDIDDAMF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G164000`
TK1151 ID	TkA08G164000
OH-1004 ID	LXL04_032295
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 94.526 / OH-1004 31.318 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G164000

Location Chr08:42815025-42815849 (-)

Description Similar to RH29: Putative DEAD-box ATP-dependent RNA helicase 29

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g77030`	Putative DEAD-box ATP-dependent RNA helicase 29.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YV85`	DEAD-box ATP-dependent RNA helicase 29.	No verified direct reference in this release
`Os08g0416100`	DEAD-box ATP-dependent RNA helicase 29.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032295 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006364 rRNA processing Biological Process

GO:0006396 RNA processing Biological Process

GO:0009409 response to cold Biological Process

GO:0016070 RNA metabolic process Biological Process

GO:0030520 estrogen receptor signaling pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G77030

dosa:Os08g0416100

hsa:79039

mmu:71990

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.564

Rank 1 · TkA08G164000 · TK1151

Cytoplasm0.514

Rank 2 · TkA08G164000 · TK1151

Mitochondrion0.060

Rank 3 · TkA08G164000 · TK1151

Endoplasmic reticulum0.037

Rank 4 · TkA08G164000 · TK1151

Cell membrane0.032

Rank 5 · TkA08G164000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00270DEAD9-61 aa

PF00271Helicase_C34-54 aa

PF16203ERCC3_RAD25_C94-188 aa

PF21090P-loop_SecA94-183 aa

PF00271Helicase_C97-207 aa

PF00270DEAD110-126 aa

PF21090P-loop_SecA201-220 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G164000	`PF00270`	DEAD	9	61	7.8e-13	49.2
TkA08G164000	`PF00271`	Helicase_C	34	54	8.3e-27	94.3
TkA08G164000	`PF16203`	ERCC3_RAD25_C	94	188	0.0043	17.1
TkA08G164000	`PF21090`	P-loop_SecA	94	183	0.0048	17.3
TkA08G164000	`PF00271`	Helicase_C	97	207	8.3e-27	94.3
TkA08G164000	`PF00270`	DEAD	110	126	7.8e-13	49.2
TkA08G164000	`PF21090`	P-loop_SecA	201	220	0.0048	17.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O49289`	Arabidopsis thaliana	sp\|O49289\|RH29_ARATH Putative DEAD-box ATP-dependent RNA helicase 29	79.000%	Swiss-Prot	High
`A2YV85`	Oryza sativa subsp. indica	sp\|A2YV85\|RH29_ORYSI DEAD-box ATP-dependent RNA helicase 29	74.100%	Swiss-Prot	High
`A3BT52`	Oryza sativa subsp. japonica	sp\|A3BT52\|RH29_ORYSJ DEAD-box ATP-dependent RNA helicase 29	74.100%	Swiss-Prot	High

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