TkA08G163980 | RubberDandelionOmics

Gene overview

TkA08G163980

Reference: TK1151 Chr: Chr08 Coordinates: 42808030-42811558 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1949 bp · TkA08G163980|TK1151|cDNA

CCATATTTCATTTACAGTTTTATTAACTTCACCGTCTTTTCAATTTCATATATGTATACATAATATATTATTCAGAAATTCTTAGTCATCTATATCTTCTGATTTCTATAAAGACGTCTATGATGTATATGGTAGTCATACGATATATAAATATCTATATACTCTAATCGATATCCAAGAGAGAGATTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTGCATGCCGGTTCTAGC...

CDS

Download CDS FASTA

1086 bp · TkA08G163980|TK1151|CDS

ATGAGTTGCTTCGGTTGTTGTGGAGAAGACGACATGCAAAAGTCTTACGATAATGGACAGTACATGCCAAATAACGCAACAGGAAACAATGCAGGCTATCGCACCACTGAATCCACACAAAAGGACACACAATCTGTACCCATTCAGCCGATTGCTGTCCCCACCATCCAGGTGGACGAATTAAAGGAAATCACTGATAATTTTGGTACAAAATCATTAATCGGTGAAGGATCATATGGAAGAGTCTACCATGGTGTCTT...

Protein

Download Protein FASTA

361 aa · TkA08G163980|TK1151|PROTEIN

MSCFGCCGEDDMQKSYDNGQYMPNNATGNNAGYRTTESTQKDTQSVPIQPIAVPTIQVDELKEITDNFGTKSLIGEGSYGRVYHGVLRSGQAAAIKKLDSSKQPDHEFLAQVSMVSRLKNDHVVELLGYCVDGGLRVLTYEFASNGSLHDILHGRKGVKGAQPGPVLTWSQRVKIAVGAAKGLEYLHEKAQPHIIHRDIKSSNVLLFDEDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLSSKSDVYS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G163980`
TK1151 ID	TkA08G163980
OH-1004 ID	LXL04_004198
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	77.500
Protein coverage (%)	TK1151 85.596 / OH-1004 70.776 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G163980

Location Chr08:42808030-42811558 (-)

Description Similar to PTI13: PTI1-like tyrosine-protein kinase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g62220`	May phosphorylate ABA receptors and participate in ABA signaling during dehydration.	Monomerization of abscisic acid receptors through CARKs-mediated phosphorylation.2022 · DOI: 10.1111/nph.18149
`At2g47060`	Receptor-like cytoplasmic kinase (RLCK) that triggers abscisic acid (ABA) signaling in response to dehydration by phosphorylating and activating ABA receptors to support their monomerization and enhance their ABA binding affinity; they in turn repress PP2C protein phosphatases acting as negative regulators of ABA responses (Probable).	The Arabidopsis protein kinase Pto-interacting 1-4 is a common target of the oxidative signal-inducible 1 and mitogen-activated protein kinases.2011 · DOI: 10.1111/j.1742-4658.2011.08033.x Monomerization of abscisic acid receptors through CARKs-mediated phosphorylation.2022 · DOI: 10.1111/nph.18149
`At3g17410`	May phosphorylate ABA receptors and participate in ABA signaling during dehydration.	CARK1 mediates ABA signaling by phosphorylation of ABA receptors.2018 · DOI: 10.1038/s41421-018-0029-y The Expression of CARK1 or RCAR11 Driven by Synthetic Promoters Increases Drought Tolerance in Arabidopsis thaliana .2018 · DOI: 10.3390/ijms19071945 Monomerization of abscisic acid receptors through CARKs-mediated phosphorylation.2022 · DOI: 10.1111/nph.18149
`At1g48210`	Receptor-like cytoplasmic kinase (RLCK) that triggers abscisic acid (ABA) signaling in response to dehydration by phosphorylating and activating ABA receptors (e.g. PYR1/RCAR11, PYL1/RCAR12, PYL3/RCAR13 and PYL2/RCAR14) to support their monomerization and enhance their ABA binding affinity; they in turn repress PP2C protein phosphatases acting as negative regulators of ABA responses.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004198 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0010029 regulation of seed germination Biological Process

GO:0010375 stomatal complex patterning Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0090333 regulation of stomatal closure Biological Process

GO:1901653 cellular response to peptide Biological Process

GO:2000037 regulation of stomatal complex patterning Biological Process

GO:2000038 regulation of stomatal complex development Biological Process

GO:2000070 regulation of response to water deprivation Biological Process

GO:2000280 regulation of root development Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G06700

ath:AT2G30740

ath:AT3G59350

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.745

Rank 1 · TkA08G163980 · TK1151

Cytoplasm0.218

Rank 2 · TkA08G163980 · TK1151

Nucleus0.174

Rank 3 · TkA08G163980 · TK1151

Endoplasmic reticulum0.043

Rank 4 · TkA08G163980 · TK1151

Golgi apparatus0.031

Rank 5 · TkA08G163980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase70-279 aa

PF07714PK_Tyr_Ser-Thr71-344 aa

PF24256DUF7457172-192 aa

PF17667Pkinase_fungal179-265 aa

PF24256DUF7457313-332 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G163980	`PF00069`	Pkinase	70	279	2.7e-39	135.9
TkA08G163980	`PF07714`	PK_Tyr_Ser-Thr	71	344	4.7e-48	164.5
TkA08G163980	`PF24256`	DUF7457	172	192	0.061	14.0
TkA08G163980	`PF17667`	Pkinase_fungal	179	265	0.0044	16.5
TkA08G163980	`PF24256`	DUF7457	313	332	0.061	14.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M1Q2`	Arabidopsis thaliana	sp\|Q9M1Q2\|CARK2_ARATH Protein CYTOSOLIC ABA RECEPTOR KINASE 2	79.900%	Swiss-Prot	High
`O80719`	Arabidopsis thaliana	sp\|O80719\|CARK3_ARATH Protein CYTOSOLIC ABA RECEPTOR KINASE 3	78.900%	Swiss-Prot	High
`Q9LUT0`	Arabidopsis thaliana	sp\|Q9LUT0\|CARK1_ARATH Protein CYTOSOLIC ABA RECEPTOR KINASE 1	78.600%	Swiss-Prot	High
`F4HWU0`	Arabidopsis thaliana	sp\|F4HWU0\|CAK11_ARATH Protein CYTOSOLIC ABA RECEPTOR KINASE 11	76.300%	Swiss-Prot	High

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