RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G162330
Reference: TK1151 Chr: Chr08 Coordinates: 42373212-42374011 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

708 bp · TkA08G162330|TK1151|cDNA

ATGGCGACGTCCACATCTTGGCATGCACCAAAGAGGAACCAACCAATGGTGGCATCTAAAGCATTTCAATCATCCGATACCTTCTGCAACATTTGCATAGAGACAAAATCCAAATCAGATATGTTCTTAAACACAACAATCTGCAGCCATGTATACTGCTCTGATTGCATATGCAAACACATATCCGCAAAAATTAAAGACAACATCACGAAGGTAAAGTGTCCTCACCCAGAATGCAATGGGGAAATTGGCCCTGAACA...

CDS

Download CDS FASTA

708 bp · TkA08G162330|TK1151|CDS

ATGGCGACGTCCACATCTTGGCATGCACCAAAGAGGAACCAACCAATGGTGGCATCTAAAGCATTTCAATCATCCGATACCTTCTGCAACATTTGCATAGAGACAAAATCCAAATCAGATATGTTCTTAAACACAACAATCTGCAGCCATGTATACTGCTCTGATTGCATATGCAAACACATATCCGCAAAAATTAAAGACAACATCACGAAGGTAAAGTGTCCTCACCCAGAATGCAATGGGGAAATTGGCCCTGAACA...

Protein

Download Protein FASTA

235 aa · TkA08G162330|TK1151|PROTEIN

MATSTSWHAPKRNQPMVASKAFQSSDTFCNICIETKSKSDMFLNTTICSHVYCSDCICKHISAKIKDNITKVKCPHPECNGEIGPEHCRTIIPKEVLERWEDALCESLILGTQKIYCPFKDCSAMLVDDGGKAVTSSECPNCNRLFCAQCKVAWHSGMDCNEFKNLKSDERNPEDIMVMQLAKNKNWRRCPNCNYFVERNGGCLHILCRCGYEFCYGCGKKYHKSHACNPRTRDI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G162330
TK1151 IDTkA08G162330
OH-1004 IDLXL04_032268
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)90.000
Protein coverage (%)TK1151 99.574 / OH-1004 72.174
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G162330
LocationChr08:42373212-42374011 (+)
DescriptionSimilar to ARI9: Probable E3 ubiquitin-protein ligase ARI9
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032268 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000209 protein polyubiquitination Biological Process
GO:0002221 pattern recognition receptor signaling pathway Biological Process
GO:0002753 cytoplasmic pattern recognition receptor signaling pathway Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009740 gibberellic acid mediated signaling pathway Biological Process
GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process
GO:0010431 seed maturation Biological Process
GO:0010476 gibberellin mediated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0085020 protein K6-linked ubiquitination Biological Process
GO:0140547 acquisition of seed longevity Biological Process
KEGG gene cross-reference
ath:AT2G26130
ath:AT2G31760
ath:AT2G31770
hsa:9781
mmu:108089
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.891
Rank 1 · TkA08G162330 · TK1151
Cytoplasm0.218
Rank 2 · TkA08G162330 · TK1151
Cell membrane0.033
Rank 3 · TkA08G162330 · TK1151
Endoplasmic reticulum0.024
Rank 4 · TkA08G162330 · TK1151
Mitochondrion0.010
Rank 5 · TkA08G162330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01485IBR29-58 aa
PF22191IBR_129-60 aa
PF00097zf-C3HC429-75 aa
PF14634zf-RING_529-76 aa
PF13445zf-RING_UBOX29-75 aa
PF26200Rcat_RNF21647-58 aa
PF22605IBR_248-59 aa
PF01485IBR63-84 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G162330PF01485IBR29586.8e-2174.8
TkA08G162330PF22191IBR_129607.5e-0729.7
TkA08G162330PF00097zf-C3HC429750.006517.0
TkA08G162330PF14634zf-RING_529760.00717.0
TkA08G162330PF13445zf-RING_UBOX29750.007417.0
TkA08G162330PF26200Rcat_RNF21647581e-0526.7
TkA08G162330PF22605IBR_248594.4e-0524.3
TkA08G162330PF01485IBR63846.8e-2174.8
TkA08G162330PF01485IBR981606.8e-2174.8
TkA08G162330PF13445zf-RING_UBOX1051180.007417.0
TkA08G162330PF00097zf-C3HC41101180.006517.0
TkA08G162330PF14634zf-RING_51131190.00717.0
TkA08G162330PF22605IBR_21281554.4e-0524.3
TkA08G162330PF22191IBR_11351607.5e-0729.7
TkA08G162330PF14634zf-RING_51361440.00717.0
TkA08G162330PF26200Rcat_RNF2161381471e-0526.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser