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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G161640
Reference: TK1151 Chr: Chr08 Coordinates: 42168016-42171682 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2049 bp · TkA08G161640|TK1151|cDNA

ATGTCGGTGCTCGTTCCGTTGCTGTTCATCTTTCTTGTTCTTGGTCCAGACTTCATTAATGGCGACACAGATCCATCCGATGTCGCTGCTCTGGTAGCCATGTATCAAGGATTAAATTCTCCGGGGCAATTAACCAAGTGGAGCTCCGGCGGCGGCGATCCCTGTGGAGATAACTGGAAAGGGGTTACTTGTTCGGGGTCAAGAGTCACGGAAATCAAACTTCCAAGTCTTGGACTCACTGGGGGAATCGGATTCCAGCT...

CDS

Download CDS FASTA

2049 bp · TkA08G161640|TK1151|CDS

ATGTCGGTGCTCGTTCCGTTGCTGTTCATCTTTCTTGTTCTTGGTCCAGACTTCATTAATGGCGACACAGATCCATCCGATGTCGCTGCTCTGGTAGCCATGTATCAAGGATTAAATTCTCCGGGGCAATTAACCAAGTGGAGCTCCGGCGGCGGCGATCCCTGTGGAGATAACTGGAAAGGGGTTACTTGTTCGGGGTCAAGAGTCACGGAAATCAAACTTCCAAGTCTTGGACTCACTGGGGGAATCGGATTCCAGCT...

Protein

Download Protein FASTA

682 aa · TkA08G161640|TK1151|PROTEIN

MSVLVPLLFIFLVLGPDFINGDTDPSDVAALVAMYQGLNSPGQLTKWSSGGGDPCGDNWKGVTCSGSRVTEIKLPSLGLTGGIGFQLSSLTSLTEFDISNNYLGNQMPFSLPPNAQRLNFAGCGYTGSLPWSISQMASLRYLNVAHNQISGQLLDMFGQLPSLTTLDLSSNSFTGDLPQSISLLSSANNMYLQNNQFTGSIDVLANLPLKTLNVANNKFTGWIPSQLRNINFQNEGNSWNTGPAPPPPPGTPAAGGGGGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G161640
TK1151 IDTkA08G161640
OH-1004 IDLXL04_032256
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)93.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G161640
LocationChr08:42168016-42171682 (+)
DescriptionSimilar to SRF7: Protein STRUBBELIG-RECEPTOR FAMILY 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g14350 Protein STRUBBELIG-RECEPTOR FAMILY 7. No verified direct reference in this release
At1g53730 Protein STRUBBELIG-RECEPTOR FAMILY 6. No verified direct reference in this release
At4g22130 Protein STRUBBELIG-RECEPTOR FAMILY 8. No verified direct reference in this release
At1g78980 Protein STRUBBELIG-RECEPTOR FAMILY 5. No verified direct reference in this release
At3g13065 Acts as a direct positive regulator of leaf size but not leaf shape.
Molecular characterisation of the STRUBBELIG-RECEPTOR FAMILY of genes encoding putative leucine-rich repeat receptor-like kinases in Arabidopsis thaliana.2007 · DOI: 10.1186/1471-2229-7-16

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032256 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT1G53730
ath:AT1G78980
ath:AT3G13065
ath:AT3G14350
ath:AT4G22130
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.854
Rank 1 · TkA08G161640 · TK1151
Cytoplasm0.082
Rank 2 · TkA08G161640 · TK1151
Endoplasmic reticulum0.073
Rank 3 · TkA08G161640 · TK1151
Nucleus0.059
Rank 4 · TkA08G161640 · TK1151
Lysosome / Vacuole0.026
Rank 5 · TkA08G161640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_225-65 aa
PF23952LRR_EndoS70-101 aa
PF12799LRR_479-103 aa
PF23598LRR_1487-176 aa
PF24141LRR_ComC87-180 aa
PF25013LRR_Zer-187-175 aa
PF13855LRR_888-103 aa
PF13516LRR_690-104 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G161640PF08263LRRNT_225652.1e-1041.4
TkA08G161640PF23952LRR_EndoS701010.01816.0
TkA08G161640PF12799LRR_4791035.8e-1143.0
TkA08G161640PF23598LRR_14871767.7e-0728.9
TkA08G161640PF24141LRR_ComC871800.01216.0
TkA08G161640PF25013LRR_Zer-1871750.03614.9
TkA08G161640PF13855LRR_8881032.1e-0731.3
TkA08G161640PF13516LRR_6901044.5e-0730.1
TkA08G161640PF00560LRR_1921111.8e-1451.5
TkA08G161640PF00560LRR_11161361.8e-1451.5
TkA08G161640PF13855LRR_81321492.1e-0731.3
TkA08G161640PF23952LRR_EndoS1321710.01816.0
TkA08G161640PF13516LRR_61371514.5e-0730.1
TkA08G161640PF00560LRR_11381601.8e-1451.5
TkA08G161640PF12799LRR_41381765.8e-1143.0
TkA08G161640PF13855LRR_81381972.1e-0731.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LUL4Arabidopsis thalianasp|Q9LUL4|SRF7_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 760.600%Swiss-ProtHigh
Q9C8M9Arabidopsis thalianasp|Q9C8M9|SRF6_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 657.800%Swiss-ProtHigh
Q6R2J8Arabidopsis thalianasp|Q6R2J8|SRF8_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 851.800%Swiss-ProtHigh
Q6R2K1Arabidopsis thalianasp|Q6R2K1|SRF5_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 546.400%Swiss-ProtMedium
Q6R2K2Arabidopsis thalianasp|Q6R2K2|SRF4_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 443.000%Swiss-ProtMedium

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