Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1746 bp · TkA08G158800|TK1151|cDNA
CAACGGACTAACAGACTCCCTCTCTCTAGACGTACAGGCTTTATATATGCACGAGATACACAGTCAGCCACACACACTTCACATCTTCAGAGTTCAGACGCCATTGATACGCTAATTTTCGTTCGTTCAATCTCTCTTATTCCTTCGTTATGGCAATGCCGATTGTTCTTCAACCCTCTCCACTGCTACTACCGTTCACTGAACACCGGTCTTCACTCTACGCTGGAGATCTTCACCCCGACACCACTGACCACGATCTC...
1473 bp · TkA08G158800|TK1151|CDS
ATGGCAATGCCGATTGTTCTTCAACCCTCTCCACTGCTACTACCGTTCACTGAACACCGGTCTTCACTCTACGCTGGAGATCTTCACCCCGACACCACTGACCACGATCTCTATCACCTTTTCTCCATGATCGGCCCGGTATCTTCTGTTCGTCTCTGCAGAGATCGTTTCTCCCAAAAATCCCTCTGCTACGCTTACATCAATTTCTGCGTCCATTCTCACGCGGCTGTGGCGTTGAAACGATTAAATCACTATGAGTT...
Protein
Download Protein FASTA490 aa · TkA08G158800|TK1151|PROTEIN
MAMPIVLQPSPLLLPFTEHRSSLYAGDLHPDTTDHDLYHLFSMIGPVSSVRLCRDRFSQKSLCYAYINFCVHSHAAVALKRLNHYELKGKPMRLMWCQRDPLTRKTGVANLFVKNLDPVVTDAELEKIFGKFGKIHSSKIAKDIHGDSKGFGFVQFDSEESANDALTAMDGSTFEGNIISVAKYLKKSERKEPEFTNVYVKNLDSDFTESLLREKFSEYGNVTSAVIMTDSDGKSKGFGFVNFESHESAKKAIDALNGAL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA08G158800 |
|---|---|
| TK1151 ID | TkA08G158800 |
| OH-1004 ID | LXL04_032164 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.000 |
| Protein coverage (%) | TK1151 98.980 / OH-1004 88.342Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA08G158800 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:41339603-41341900 (-) | |||||||||
| Description | Similar to PAB6: Polyadenylate-binding protein 6 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006413 translational initiation Biological Process GO:0006417 regulation of translation Biological Process GO:0006446 regulation of translational initiation Biological Process GO:0016071 mRNA metabolic process Biological Process GO:0031124 mRNA 3'-end processing Biological Process GO:0051028 mRNA transport Biological Process GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0005840 ribosome Cellular Component GO:0010494 cytoplasmic stress granule Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G16380 sce:YER165W These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF28978RRM_SRRT21-43 aaPF00076RRM_123-92 aaPF16367RRM_724-48 aaPF22976RRM_1028-90 aaPF13893RRM_529-100 aaPF28442DUF840052-94 aaPF04059RRM_260-79 aaPF25701RRM_YTH160-89 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA08G158800 | PF28978 | RRM_SRRT | 21 | 43 | 0.012 | 16.5 |
| TkA08G158800 | PF00076 | RRM_1 | 23 | 92 | 2.7e-85 | 280.9 |
| TkA08G158800 | PF16367 | RRM_7 | 24 | 48 | 6.6e-09 | 36.3 |
| TkA08G158800 | PF22976 | RRM_10 | 28 | 90 | 4.9e-10 | 40.1 |
| TkA08G158800 | PF13893 | RRM_5 | 29 | 100 | 3.8e-08 | 33.8 |
| TkA08G158800 | PF28442 | DUF8400 | 52 | 94 | 0.053 | 14.4 |
| TkA08G158800 | PF04059 | RRM_2 | 60 | 79 | 0.091 | 13.7 |
| TkA08G158800 | PF25701 | RRM_YTH1 | 60 | 89 | 0.11 | 13.0 |
| TkA08G158800 | PF24475 | RBD_DEAH11 | 61 | 95 | 5.4e-07 | 30.5 |
| TkA08G158800 | PF29326 | RRM_MUD2_C | 61 | 90 | 1.5e-06 | 29.0 |
| TkA08G158800 | PF16842 | RRM_occluded | 65 | 93 | 2.3e-08 | 34.5 |
| TkA08G158800 | PF04847 | Calcipressin | 65 | 106 | 0.044 | 14.3 |
| TkA08G158800 | PF29396 | F07F6_N | 66 | 100 | 0.12 | 12.8 |
| TkA08G158800 | PF04059 | RRM_2 | 105 | 142 | 0.091 | 13.7 |
| TkA08G158800 | PF13893 | RRM_5 | 109 | 181 | 3.8e-08 | 33.8 |
| TkA08G158800 | PF11608 | RRM_MARF1 | 110 | 183 | 8.3e-05 | 23.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.