TkA08G158290 | RubberDandelionOmics

Gene overview

TkA08G158290

Reference: TK1151 Chr: Chr08 Coordinates: 41201032-41202550 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1204 bp · TkA08G158290|TK1151|cDNA

CTCAAATCCCGCTAACCCTGTTATAAATCTTCCCCCCATCTCCGTATCAACCAAATCTCAACAATGACGAAACTCCACCTCCTCATCCTCCTCTCTCTCCTCCTACTCTCCACCTTCGCACCACTGTCTCACGGTGCTGACTCCGCCACCCAACAACCCAACACCATCCCGGAGGAATGCTTGACAGCCACCGGCGGACCATGCCACAGCAAAACCAGATCTTTAAAGCTTAAACTCGTCGCCATTGCAGCAATTCTAGT...

CDS

Download CDS FASTA

1059 bp · TkA08G158290|TK1151|CDS

ATGACGAAACTCCACCTCCTCATCCTCCTCTCTCTCCTCCTACTCTCCACCTTCGCACCACTGTCTCACGGTGCTGACTCCGCCACCCAACAACCCAACACCATCCCGGAGGAATGCTTGACAGCCACCGGCGGACCATGCCACAGCAAAACCAGATCTTTAAAGCTTAAACTCGTCGCCATTGCAGCAATTCTAGTCGCTAGCATGATGGGTGTCACCCTACCAATGCTTTCACGGACCATACCCGCTTTACAACCCGA...

Protein

Download Protein FASTA

352 aa · TkA08G158290|TK1151|PROTEIN

MTKLHLLILLSLLLLSTFAPLSHGADSATQQPNTIPEECLTATGGPCHSKTRSLKLKLVAIAAILVASMMGVTLPMLSRTIPALQPDKKLFVLVKAFASGVILATGYMHVLPDSFDCLTSQCLPENPWRKFPFTTFIAMLSAVLTLMVDSYAMSWYKKYSTPPEKRIEKVEQKFSGHFHGDGSSGLDSSTTQLRRYRVVAQVLELGIVVHSVVIGLSMGASDNLCTIRPLVAALCFHQFFEGMGLGGCILQAEYETKMKA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G158290`
TK1151 ID	TkA08G158290
OH-1004 ID	LXL04_032178
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G158290

Location Chr08:41201032-41202550 (-)

Description Similar to IRT1: Fe(2+) transport protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g45105`	Probably mediates zinc uptake from the rhizosphere.	No verified direct reference in this release
`At4g19690`	High-affinity iron transporter that plays a key role in the uptake of iron from the rhizosphere across the plasma membrane in the root epidermal layer.	IRT1, an Arabidopsis transporter essential for iron uptake from the soil and for plant growth.2002 · DOI: 10.1105/tpc.001388
`At1g31260`	Probably mediates zinc uptake from the rhizosphere.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0667500`	Iron transporter involved in the uptake of iron from the rhizosphere across the plasma membrane in the root epidermal layer.	Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+.2006 · DOI: 10.1111/j.1365-313x.2005.02624.x Over-expression of OsIRT1 leads to increased iron and zinc accumulations in rice.2009 · DOI: 10.1111/j.1365-3040.2009.01935.x
`Os03g0667300`	Iron transporter that may play a role in the uptake of iron from the rhizosphere across the plasma membrane in the root epidermal layer.	Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+.2006 · DOI: 10.1111/j.1365-313x.2005.02624.x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032178 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006826 iron ion transport Biological Process

GO:0006829 zinc ion transport Biological Process

GO:0015691 cadmium ion transport Biological Process

GO:0071577 zinc ion transmembrane transport Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005385 zinc ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G31260

ath:AT2G04032

dosa:Os03g0667300

dosa:Os03g0667500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.791

Rank 1 · TkA08G158290 · TK1151

Endoplasmic reticulum0.080

Rank 2 · TkA08G158290 · TK1151

Cytoplasm0.079

Rank 3 · TkA08G158290 · TK1151

Lysosome / Vacuole0.076

Rank 4 · TkA08G158290 · TK1151

Golgi apparatus0.038

Rank 5 · TkA08G158290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02535Zip54-349 aa

PF20382DUF667793-108 aa

PF248388xMP135-197 aa

PF20382DUF6677234-316 aa

PF248388xMP259-298 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G158290	`PF02535`	Zip	54	349	1e-76	259.0
TkA08G158290	`PF20382`	DUF6677	93	108	0.032	15.4
TkA08G158290	`PF24838`	8xMP	135	197	0.21	12.1
TkA08G158290	`PF20382`	DUF6677	234	316	0.032	15.4
TkA08G158290	`PF24838`	8xMP	259	298	0.21	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8S3W4`	Arabidopsis thaliana	sp\|Q8S3W4\|ZIP8_ARATH Probable zinc transporter 8	59.300%	Swiss-Prot	High
`Q38856`	Arabidopsis thaliana	sp\|Q38856\|IRT1_ARATH Fe(2+) transport protein 1	58.100%	Swiss-Prot	High
`Q8W245`	Arabidopsis thaliana	sp\|Q8W245\|ZIP10_ARATH Probable zinc transporter 10	54.600%	Swiss-Prot	High
`Q75HB1`	Oryza sativa subsp. japonica	sp\|Q75HB1\|IRT1_ORYSJ Fe(2+) transport protein 1	60.100%	Swiss-Prot	High
`Q6L8G1`	Oryza sativa subsp. japonica	sp\|Q6L8G1\|IRT2_ORYSJ Fe(2+) transport protein 2	56.800%	Swiss-Prot	High

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