Gene Card
Gene overview
cDNA / CDS / Protein Sequences
972 bp · TkA08G140660|TK1151|cDNA
CAACAACTCAGCTGCGACAGAATAACCAGAATAAATTCTCTCTCATCTTTTGCTGTTTTCATGTGTTTTCAACCGCCTGTGTTATTGAGATTTTGACGGAGTAATGGATGATGGTAAGAAGATGGAGAATACCGTCGTTAATGGCTTCTCTCCGGTGACTTCTACTCCTGTTTTCTGGAAATCTCGAAAGAGATCAGCTAGTGCGAAGAATTTGTTCAAGGACATTGTAGACGAAGCTGATAAGACTTCTGACAAGAAGG...
633 bp · TkA08G140660|TK1151|CDS
ATGGATGATGGTAAGAAGATGGAGAATACCGTCGTTAATGGCTTCTCTCCGGTGACTTCTACTCCTGTTTTCTGGAAATCTCGAAAGAGATCAGCTAGTGCGAAGAATTTGTTCAAGGACATTGTAGACGAAGCTGATAAGACTTCTGACAAGAAGGAAGAACAGCTAATCACCGATGAAAAAATGGAAGAATCAACTCCGCCTACAGTTCTCTCTGAGAAACGTAAGGCTCTGTTTGAACCTCTAGAACCAATAATGGA...
Protein
Download Protein FASTA210 aa · TkA08G140660|TK1151|PROTEIN
MDDGKKMENTVVNGFSPVTSTPVFWKSRKRSASAKNLFKDIVDEADKTSDKKEEQLITDEKMEESTPPTVLSEKRKALFEPLEPIMDLNGRRPSAETLLPPPDFDSASYPRGWLIGKKRKLVNVDVVESMRRIAVQEMNRKDREIDGLNEQLEEDARVLEHLQLQLLDERSKRADAERQKSMLQNQVDMLMNMLQEPENIDDEDATSQEP
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA08G140660 |
|---|---|
| TK1151 ID | TkA08G140660 |
| OH-1004 ID | LXL04_009233 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 74.900 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 18.964Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA08G140660 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:36626350-36628069 (-) | |||||||||
| Description | Similar to HDR1: Protein HEADING DATE REPRESSOR 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. Rice
| |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006310 DNA recombination Biological Process GO:0009908 flower development Biological Process GO:0009909 regulation of flower development Biological Process GO:0032197 retrotransposition Biological Process GO:0090304 nucleic acid metabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0003676 nucleic acid binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004523 RNA-DNA hybrid ribonuclease activity Molecular Function GO:0009036 type II site-specific deoxyribonuclease activity Molecular Function GO:0046872 metal ion binding Molecular Function | |||||||||
| KEGG gene cross-reference | dosa:Os02g0793900 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF10366Vps39_124-71 aaPF30963HDR136-55 aaPF29876VAB236-64 aaPF24079UBR450-55 aaPF30963HDR171-187 aaPF24079UBR4119-182 aaPF03564DUF1759122-180 aaPF29876VAB2122-202 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA08G140660 | PF10366 | Vps39_1 | 24 | 71 | 0.23 | 12.5 |
| TkA08G140660 | PF30963 | HDR1 | 36 | 55 | 2.1e-67 | 225.3 |
| TkA08G140660 | PF29876 | VAB2 | 36 | 64 | 5.4 | 7.7 |
| TkA08G140660 | PF24079 | UBR4 | 50 | 55 | 0.9 | 10.6 |
| TkA08G140660 | PF30963 | HDR1 | 71 | 187 | 2.1e-67 | 225.3 |
| TkA08G140660 | PF24079 | UBR4 | 119 | 182 | 0.9 | 10.6 |
| TkA08G140660 | PF03564 | DUF1759 | 122 | 180 | 0.099 | 13.4 |
| TkA08G140660 | PF29876 | VAB2 | 122 | 202 | 5.4 | 7.7 |
| TkA08G140660 | PF10366 | Vps39_1 | 163 | 192 | 0.23 | 12.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.