TkA08G135240 | RubberDandelionOmics

Gene overview

TkA08G135240

Reference: TK1151 Chr: Chr08 Coordinates: 35186168-35187865 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1650 bp · TkA08G135240|TK1151|cDNA

ATGGATGGTATACGGGCCTCATGTAGACCACTCGAGTTTTTAATACTTGTTCTTTTACTACTGAACCGCGTTGTATGTAACCGGTCAAAGTCTGGTTGGAACTGGGACCTACTCATGAACAACACAGGTGTGGTAGCAATGCACATGGCGGTCACCCACCACAACAAAGTCGTCATATTCGACCAGACCGATGCGGGCCCGTCTCAGTATCGGTTACGAAAGTGCAAGAATCGAGGTGGGTCCCGGGAGTCCTCATGTTA...

CDS

Download CDS FASTA

1650 bp · TkA08G135240|TK1151|CDS

ATGGATGGTATACGGGCCTCATGTAGACCACTCGAGTTTTTAATACTTGTTCTTTTACTACTGAACCGCGTTGTATGTAACCGGTCAAAGTCTGGTTGGAACTGGGACCTACTCATGAACAACACAGGTGTGGTAGCAATGCACATGGCGGTCACCCACCACAACAAAGTCGTCATATTCGACCAGACCGATGCGGGCCCGTCTCAGTATCGGTTACGAAAGTGCAAGAATCGAGGTGGGTCCCGGGAGTCCTCATGTTA...

Protein

Download Protein FASTA

549 aa · TkA08G135240|TK1151|PROTEIN

MDGIRASCRPLEFLILVLLLLNRVVCNRSKSGWNWDLLMNNTGVVAMHMAVTHHNKVVIFDQTDAGPSQYRLRKCKNRGGSRESSCYAHSVEYNIMKNKVRALHLTTDTWCSSGSFLGNGTLLQTGGNGSGSKKIRIYKPCKDNKCDWTESKREMFVRRWYSSTLYLPKENSVIVVGGQSAFSYEFIPQTSSKPYDLPFLHRTFERNSKGNNLYPFLHLSNNGLLFIFANRDSILFDYKKRKVVKKFPKIPGNGGRSYPS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G135240`
TK1151 ID	TkA08G135240
OH-1004 ID	LXL04_031902
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	96.600
Protein coverage (%)	TK1151 93.078 / OH-1004 79.129 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G135240

Location Chr08:35186168-35187865 (+)

Description Similar to GLOX: Aldehyde oxidase GLOX

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67290`	Catalyzes the oxidation of aldehydes to the corresponding carboxylate by coupling the reaction to the reduction of dioxygen to hydrogen peroxide.	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana.2011 · DOI: 10.1105/tpc.110.082651

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_031902 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0050665 hydrogen peroxide biosynthetic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004031 aldehyde oxidase activity Molecular Function

KEGG gene cross-reference

abe:ARB_07867

ag:AAA33747

ath:AT1G67290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.826

Rank 1 · TkA08G135240 · TK1151

Cell membrane0.037

Rank 2 · TkA08G135240 · TK1151

Cytoplasm0.029

Rank 3 · TkA08G135240 · TK1151

Endoplasmic reticulum0.027

Rank 4 · TkA08G135240 · TK1151

Lysosome / Vacuole0.021

Rank 5 · TkA08G135240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13415Beta-prop_FBX4226-61 aa

PF07250Glyoxal_oxid_N47-431 aa

PF24981Beta-prop_ATRN-LZTR1142-205 aa

PF13415Beta-prop_FBX42163-180 aa

PF13415Beta-prop_FBX42323-408 aa

PF24981Beta-prop_ATRN-LZTR1374-410 aa

PF27441MutS_C417-435 aa

PF09118GO-like_E_set451-548 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G135240	`PF13415`	Beta-prop_FBX42	26	61	0.007	16.7
TkA08G135240	`PF07250`	Glyoxal_oxid_N	47	431	5.1e-163	543.0
TkA08G135240	`PF24981`	Beta-prop_ATRN-LZTR1	142	205	0.01	15.8
TkA08G135240	`PF13415`	Beta-prop_FBX42	163	180	0.007	16.7
TkA08G135240	`PF13415`	Beta-prop_FBX42	323	408	0.007	16.7
TkA08G135240	`PF24981`	Beta-prop_ATRN-LZTR1	374	410	0.01	15.8
TkA08G135240	`PF27441`	MutS_C	417	435	0.19	12.1
TkA08G135240	`PF09118`	GO-like_E_set	451	548	2.7e-22	79.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FYG4`	Arabidopsis thaliana	sp\|Q9FYG4\|GLOX1_ARATH Aldehyde oxidase GLOX1	42.600%	Swiss-Prot	Medium

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